User: carol white

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carol white680
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Posts by carol white

<prev • 72 results • page 1 of 8 • next >
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Comment: C: update packages when installing a new package
... No, it's not necessary. The packages update is a suggestion but usually, the problem is elsewhere that should be fixed so that the package to be installed can be installed. ...
written 2.4 years ago by carol white680
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Comment: C: update packages when installing a new package
... yes, you're right. The problem was the glpk installation ...
written 2.4 years ago by carol white680
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problem with insilicoMerging
... Hi, I tried to use insilicoMerging package and when I use 2 or more different expression sets (from 300 to 800 samples) setting method = "XPN", the execution stops and I get the msg that there is not enough samples. But when I use twice the same expression set (300 samples), the merging goes on wel ...
insilicomerging written 2.4 years ago by carol white680
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update packages when installing a new package
... Hi, When installing a package, how is it possible to avoid updating the listed packages that are asked and continue the installation? For ex, when i want to install glpkAPI, I got a long list of packages to update and when I type n for Update all/some/none? [a/s/n]:, the installation is stopped. ...
bioclite package updates written 2.4 years ago by carol white680 • updated 2.4 years ago by Dan Tenenbaum ♦♦ 8.1k
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Comment: C: iranges
... Dear Valerie, It works now. Thank you for all your advices and help Best, Carol On Monday, August 11, 2014 6:21 PM, Valerie Obenchain wrote: Hi, On 08/09/14 04:37, carol white wrote: > 1- suppose, I have seq with start and end that for some seq start > end > and for some other sta ...
written 3.2 years ago by carol white680
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narrow and xstringset
... Hi, How can narrow be used with a dnastring? because when i use it with an instance of dnastring I get Error in (function (classes, fdef, mtable)  :   unable to find an inherited method for function ‘narrow’ for signature ‘"DNAString"’ and when i convert the instance of dnastring with ...
convert written 3.2 years ago by carol white680 • updated 3.2 years ago by Valerie Obenchain ♦♦ 6.3k
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Comment: C: iranges
... 1- suppose, I have seq with start and end that for some seq start > end and for some other start < end. can I create a GRanges with strand being defined as + if start > end and - otherwise and take start and end as they (on reverse strand, start > end and on forward, start < end) or s ...
written 3.2 years ago by carol white680
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iranges
... Hi, How does width with start and end in IRanges work? I thought that if I use the end with a width, then the sequence from the end with the length of width is taken. However, in my case when I use width for ex 20 and 10, the corresponding sequences with the length 20 and 10 are not the same from th ...
iranges written 3.2 years ago by carol white680 • updated 3.2 years ago by Valerie Obenchain ♦♦ 6.3k
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Comment: C: genefilter
... For a positive quantity like variance, absolute value is not relevant. How about if a t-test value is used which could be positive or negative? the largest t-test value in absolute value corresponds to the lowest t-test p-val. Is the largest t-test value in absolue value taken by findLargest and doe ...
written 3.2 years ago by carol white680
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genefilter
... Hi, Does findLargest find the largest test statistics in absolute value which corresponds to the probe with the largest variation? Thanks carol [[alternative HTML version deleted]] ...
probe written 3.2 years ago by carol white680 • updated 3.2 years ago by Martin Morgan ♦♦ 20k

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Popular Question 2.4 years ago, created a question with more than 1,000 views. For hclustfun argument in heatmap.2 function

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