User: bioinagesh

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bioinagesh0
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Posts by bioinagesh

<prev • 8 results • page 1 of 1 • next >
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Error in IRanges, In range 1: 'end' must be >= 'start' - 1.: .Call2(\"solve_user_SEW0\", start, end, width, PACKAGE = \"IRanges\")"
... Hi there, I am trying to use IRanges v2.18.3 library in my analysis for the same GTF file for two different alignment files. Though the proper work done for one alignment files, for another one I could see the following lines whcih I am unable to understand. In range 1: 'end' must be >= 'st ...
iranges genomicranges written 4 weeks ago by bioinagesh0 • updated 4 weeks ago by James W. MacDonald52k
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Comment: C: Error in alpine::fitBiasModels shows as "offset needs to be finite"
... Hi Michael, Please check the code which I have included with in the question. ...
written 10 weeks ago by bioinagesh0
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Error in alpine::fitBiasModels shows as "offset needs to be finite"
... Hi While implementing the fitbiasmodel, I end up with the following error. Trying to figure out the reason by running the code step by step but still unable to come to a conclusion. Error in alpine::fitBiasModels(genes = ebtFit, bam.file = bf, fragtypes = fragtypes, : offset needs to be ...
alpine jcc written 10 weeks ago by bioinagesh0
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Comment: C: Error while creating txDb from gtf file
... Thanks Michael, file path is the problem and worked on it. ...
written 12 weeks ago by bioinagesh0
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Error while creating txDb from gtf file
... Hello, I am trying to create TxDb object from gtf file but end up with the following error. I have loaded required libraries abd gtf file. > gtf <-system.file("annotation_merged.gtf.gz", package = "jcc") > bam <- system.file("../sad_mer ...
genomicfeatures written 12 weeks ago by bioinagesh0
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Comment: C: BSgenomeForge version 1.52.0, error in .TwoBits_export
... Hi, I am unable to get the tree command in our institute cluster. I am trying to install it in the local user but haven't succeded. Can I get any alternative command for the required information otherwise I will check with the admin and update here. Thanks a lot! Nagesh ...
written 12 weeks ago by bioinagesh0
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BSgenomeForge version 1.52.0, error in .TwoBits_export
... Hello, I got the error while using forgeBSgenomeDataPkg during TwoBits_export since the inst directory is not creating. Please check the following comand output of forgeBSgenomeDataPkg, taceback, sessioninfo and zzz.r file packageVersion("BSgenome") [1] ‘1.52.0’ forgeBSgenomeDataPkg(" ...
bioconductor bsgenome forge twobits_export written 12 weeks ago by bioinagesh0
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Comment: C: BSgenomeForge error in .TwoBits_export
... It seems the same error is showing in the recent version 1.52.0 ...
written 12 weeks ago by bioinagesh0

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