User: Steve Lowe

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Steve Lowe10
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Posts by Steve Lowe

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Comment: C: Does anyone have experience using the massiR package?
... Just got this step to work. Thank you so much for your help!! ...
written 2 days ago by Steve Lowe10
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Comment: C: Does anyone have experience using the massiR package?
... Thank you for lending a hand! I really appreciate it --Steve ...
written 4 days ago by Steve Lowe10
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Comment: C: Does anyone have experience using the massiR package?
... > library(massiR) > set8 <- read.table(file.choose()) ##the file is a matrix from GEO, I did not change anything about this file > data(y.probes) > names(y.probes) [1] "illumina_humanwg_6_v1" "illumina_humanwg_6_v2" "illumina_humanwg_6_v1" [4] "illumina_humanht_12" "affy_hugene_1_0 ...
written 4 days ago by Steve Lowe10
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Does anyone have experience using the massiR package?
... I am having trouble aligning the probes (built into the package) to my dataset. I am concerned my dataset is not formatted correctly or there is some step I am missing. Does anyone have experience with massiR and willing to lend a hand? Thanks! ...
microarray probe R massir written 5 days ago by Steve Lowe10
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Combining different arrays in analysis
... I am currently trying to pull expression data from multiple array datasets. Is there some way (either in R or a website) that I can use to combine these datasets so that I can perform some meta-analysis? Thanks! ...
normalization R array written 5 days ago by Steve Lowe10 • updated 5 days ago by James W. MacDonald51k
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Coding vs Noncoding Genes in Hit List
... Does anyone know of a method I can use to find out which genes are coding and non-coding from my gene list? I'm trying to avoid having to look up each individual gene. Thanks! --Dr. S ...
biomart high throughput coding vs noncoding written 10 days ago by Steve Lowe10 • updated 10 days ago by Martin Morgan ♦♦ 23k
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massiR Extracting and Plotting Y Chr Probe Data
... I have the following script, and for whatever reason, I cannot run the massi.y.out function. I want to use the HG133 probe list as that is the one listed on the original GEO dataset. If anyone has any suggestions, please let me know. Thanks! > data(y.probes) > names(y.probes) [1] "illumina_hu ...
microarray probe written 13 days ago by Steve Lowe10

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