User: michael

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michael0
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Posts by michael

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ballgown -- how is statistical test performed
... I have two questions regarding ballgown: 1) Why is ballgown using FPKM for the stat. test and not counts? Is there an advantage or is this historical? 2) I guess ballgown does test transcripts "on an individual level" for differential expression, right? What I mean is: if one gene has two isoforms ...
rna-seq ballgown written 28 days ago by michael0
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ballgown: how to test for DE for my experimental setup
... I have the following setup for my rna-seq experiment: 5 samples Control 5 samples 1x concentration of chemical compound 5 samples 10x concentration of chemical compound My workflow is Hisat2 > Stringtie > ballgown Now, for ballgown "stattest", how would you test considering my experimental ...
rna-seq ballgown written 28 days ago by michael0

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