User: uridavid.akavia

Reputation:
0
Status:
New User
Last seen:
3 weeks, 4 days ago
Joined:
1 month, 3 weeks ago
Email:
u**************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by uridavid.akavia

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answer
121
views
1
answers
Comment: C: Setting up contrasts with 'limma', patient data, small number of repeats
... Thank you for your help. I'm using makeContrasts, and my code looks like this design.patients <- model.matrix(~patient, sampleDetails) F.Status <- sampleDetails$Sex=="F" & sampleDetails$Status=="After_Relapse" M.Status <- sampleDetails$Sex=="M" & sampleDetails$Status==" ...
written 5 weeks ago by uridavid.akavia0
0
votes
1
answer
121
views
1
answers
Comment: C: Setting up contrasts with 'limma', patient data, small number of repeats
... Thank you Gordon! What should I do if I don't know if there are any gender specific treatment effects? Should I run the analysis twice, once with my original design and once with your design, and then compare the coefficients for F.Status and M.Status? Can you suggest code on how to do this? I thi ...
written 6 weeks ago by uridavid.akavia0
0
votes
1
answer
121
views
1
answer
Setting up contrasts with 'limma', patient data, small number of repeats
... Hello, I'm trying to run *limma-vooom* on a Nanostring experiment. The experiment design is multiple patients, each assessed before and after treatment. So the targets structure look something like this (only more lines): ``` SampleID patient Sex Status 1 C15-1 C15 F Before Tr ...
limma nanostring contrasts written 7 weeks ago by uridavid.akavia0 • updated 7 weeks ago by Gordon Smyth39k

Latest awards to uridavid.akavia

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 350 users visited in the last hour