User: asmita

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asmita0
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Posts by asmita

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Comment: C: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
... Thanks for the response! I will try it out. ...
written 9 days ago by asmita0
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Comment: C: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
... I have RNA-Seq data from 24 tumor samples. By "recurrent switches", I mean to identify an isoform switch or in other words, a preferential isoform usage across samples. For example - If a gene has 2 isoforms A and B, I would like to identify the % of cases or samples where isoform A is used more th ...
written 11 days ago by asmita0
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
... Dear All, I am using IsoformSwitchAnalyzeR package to identify recurrent isoform switches in a set of 24 rectal tumor samples. The isoform and gene quantification has been done in RSEM. However, the package requires specifying two different conditions for making pairwise comparisons in the desig ...
cancer limma isoform isoformswitchanalyzer written 11 days ago by asmita0 • updated 10 days ago by k.vitting.seerup100

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