User: laura.fancello

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Posts by laura.fancello

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pepXMLTab error reading Mascot pepXML file
... I exported from Mascot GUI a pepXML file and I tried to read it using the pepXMLTab R package: library(pepXMLTab) options(stringsAsFactors=FALSE) pepXMLTab <- pepXMLTab::pepXML2tab(pepxml="F134048.xml") but I got this error: ***Error in (function (..., deparse.level = 1, make.row.n ...
pepxmltab mascot pepxml file written 6 days ago by laura.fancello0
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customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
... Hi I am trying to use the PrepareAnnotationEnsembl() function from customProDB package using this code: > library(customProDB) > options(download.file.method="libcurl") > ensembl <- useMart("ENSEMBL_MART_ENSEMBL", > dataset="hsapiens_gene_ensembl") annotation_path <- getwd() > ...
biomart customprodb ensembl connection written 12 days ago by laura.fancello0

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