User: ahsindoomilup

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Posts by ahsindoomilup

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Comment: C: edgeR design matrix for 2 variables + batch effect
... In reality, these samples are stem cells generated from 1 Control and 1 Patient, and harvested at an undifferentiated or at a differentiated state, in order to determine the effect of the disease on cell development. Therefore, in this dataset, there are are no true biological replicates, but we are ...
written 21 days ago by ahsindoomilup0
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edgeR design matrix for 2 variables + batch effect
... I am new to edgeR and am trying to create a design matrix for my dataset. I have read the manual and many discussion threads, but cant find a good match for my setup and am still unsure if I am using the correct design. I have a disease variable (Control vs Patient), a developmental timepoint vari ...
batch effect design matrix egder written 22 days ago by ahsindoomilup0 • updated 22 days ago by Gordon Smyth39k

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