User: Max Kauer

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Max Kauer130
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Posts by Max Kauer

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Job: Bioinformatician/Bioinformatics Data Analyst, CCRI Vienna, Austria
... Bioinformatician/Bioinformatics Data Analyst The St. Anna Kinderspital and the Children´s Cancer Research Institute (CCRI) are known for providing the highest quality of childhood cancer patient care and development of new treatment strategies, respectively. We are looking for a Bioinformatician/ B ...
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Job: Job: Bioinformatics Core, CCRI, Vienna, Austria
... Bioinformatician/Bioinformatics Data Analyst The St. Anna Kinderspital and the Children´s Cancer Research Institute (CCRI) are known for providing the highest quality of childhood cancer patient care and development of new treatment strategies, respectively. For our Bioinformatics Core Facility we ...
job bioinformatician job written 16 months ago by Max Kauer130
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DESeq2 comparison of treatment in two conditions
... Hi, I have a RNAseq dataset with this design: condition treatment sample1 A treat sample2 A treat sample3 A con sample4 A con sample5 B treat sample6 B ...
rnaseq written 3.7 years ago by Max Kauer130 • updated 3.7 years ago by Michael Love15k
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Comment: C: makePdInfoPackage for Primeview arrays
... Thanks everybody for your replies! Maybe a short addon: the reason I wanted to make this pd.info file was that I wanted to try SCAN.UPC on this arrays (which wants that file). Otherwise I tried already rma with the probe and cdf files from the Bioconductor site. And this worked just fine. At least ...
written 4.4 years ago by Max Kauer130
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makePdInfoPackage for Primeview arrays
... Hi, I am trying to make a pd.info package for the Affy Primeview array, but I get an error. Thanks for any help! Cheers, Max This is my code: library(pdInfoBuilder) cdf <- list.files( pathAnnotPr, pattern = ".cdf", full.names = TRUE ) cel <- list.files( pathC, pattern = ".CEL", f ...
biocviews annotation cancer organism cdf probe affy written 4.4 years ago by Max Kauer130 • updated 4.4 years ago by cstrato3.8k
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Answer: A: Analysing multiple-platform gene expression data
... Thanks Matt! Great! Actually I have two more questions for frma: 1) could one use frma also for hgu133a2 arrays (with the null- distribution vectors for hgu133a arrays)? I guess not, but I thought I'd ask anyway 2) could I somewhere access the expression-distribution (not only the null-distribution) ...
written 6.8 years ago by Max Kauer130
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Answer: A: Analysing multiple-platform gene expression data
... Hi, along the same lines I wondered if one can take the z-scores from the barcode() function in the frma package. From my understanding these scores give a "distance" from the empirically defined value of no expression (separately for hgu133a and hgu133plus2), so in theory these could be comparable ...
written 6.8 years ago by Max Kauer130
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GenomeGraphs
... Hi when I replicate the example for exon array data in the GenomeGraphs vignette and set displayProbesets to TRUE then the names of the probesets and the lines that connect the intensity graph with the affy-genemodel are on top of each other. I wondered if the probeset names could be displayed above ...
cancer graph written 8.6 years ago by Max Kauer130 • updated 8.6 years ago by Paul Leo970
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Answer: A: heatmap.2
... You can use the heatmapCol function from the Slmisc package max -------------------------------------- Maximilian Kauer CCRI - Children's Cancer Research Institute -----Urspr?ngliche Nachricht----- Von: bioconductor-bounces at stat.math.ethz.ch im Auftrag von Anastasia Gioti Gesendet: Di 23.12 ...
written 8.9 years ago by Max Kauer130
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cross study comparison of cell populations
... Dear List, I want to compare a tumor cell population to different normal cell populations on affy chips from different batches (studies) The problem is that the tumor cell population and one of the normal cell populations come from one batch, whereas the other cell populations come from two othe ...
cancer affy metaarray written 9.4 years ago by Max Kauer130

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Popular Question 13 months ago, created a question with more than 1,000 views. For DESeq2 comparison of treatment in two conditions

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