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Answer: A: Problem with intraIDMapper
13.6 years ago Marc Carlson ★ 7.2k
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3.6k
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Comment: C: retrieve gene symbol/description
13.6 years ago Marc Carlson ★ 7.2k
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1.5k
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Comment: C: What populates makeTranscriptDbFromBiomart?
13.6 years ago Marc Carlson ★ 7.2k
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1.5k
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Comment: C: What populates makeTranscriptDbFromBiomart?
13.6 years ago Marc Carlson ★ 7.2k
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1.7k
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Comment: C: load a TranscriptDb object in another R session?
13.6 years ago Marc Carlson ★ 7.2k
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4
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2.7k
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Comment: C: Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer
13.6 years ago Marc Carlson ★ 7.2k
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1.1k
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Comment: C: How can I access to a gene set
13.6 years ago Marc Carlson ★ 7.2k
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1.6k
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Comment: C: KEGGSOAP
13.7 years ago Marc Carlson ★ 7.2k
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1.2k
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Answer: A: AnnotationDbi - makeOrgPackageFromNCBI - gene_info table is not populated
13.7 years ago Marc Carlson ★ 7.2k
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1
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2.1k
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problem creating own org.Ss.eg.db
Annotation GO Organism OrgDb Annotation GO Organism OrgDb
updated 13.7 years ago by ★ 4.1k • written 13.7 years ago by ★ 7.2k
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3
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6.4k
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how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 3.4 years ago by • 0 • written 13.7 years ago by ★ 7.2k
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1.0k
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Answer: A: missing probe_id in ath1121501.db
13.7 years ago Marc Carlson ★ 7.2k
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0
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591
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Answer: A: Fw: annotaion package
13.8 years ago Marc Carlson ★ 7.2k
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1
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1.7k
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Comment: C: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
13.8 years ago Marc Carlson ★ 7.2k
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2
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1.7k
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Answer: A: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
13.8 years ago Marc Carlson ★ 7.2k
0
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0
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811
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create GeneSetCollection from OBOCollection
GO convert GOstats GO convert GOstats
13.8 years ago Marc Carlson ★ 7.2k
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0
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938
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Answer: A: subsetting transcriptDb
13.8 years ago Marc Carlson ★ 7.2k
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1
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1.7k
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Answer: A: A bug in either KEGG or KEGGSOAP?
13.8 years ago Marc Carlson ★ 7.2k
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0
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1.0k
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Answer: A: KEGGSOAP
13.8 years ago Marc Carlson ★ 7.2k
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0
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2.4k
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Answer: A: limma topTable with gene symbols in output: annotate problem
13.8 years ago Marc Carlson ★ 7.2k
0
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0
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946
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Answer: A: Saureus Affy Chip
13.9 years ago Marc Carlson ★ 7.2k
0
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0
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1.3k
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Difference between go, with_go and with_go_go
GO biomaRt GO biomaRt
13.9 years ago Marc Carlson ★ 7.2k
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1
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2.1k
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Answer: A: getSequence with biomaRt
13.9 years ago Marc Carlson ★ 7.2k
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0
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1.3k
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Comment: C: how to add a table to AnnotationDbi sqlite database?
13.9 years ago Marc Carlson ★ 7.2k
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0
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1.3k
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Answer: A: how to add a table to AnnotationDbi sqlite database?
14.0 years ago Marc Carlson ★ 7.2k
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1
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2.3k
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Comment: C: problem with GO terms
14.0 years ago Marc Carlson ★ 7.2k
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0
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2.6k
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Answer: A: PFAM gene enrichment test using GOstats and Category
14.0 years ago Marc Carlson ★ 7.2k
0
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0
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1.1k
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Answer: A: KEGGSOAP incomplete list.pathways
14.0 years ago Marc Carlson ★ 7.2k
0
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0
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3.6k
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Comment: C: GSVA: using Entrez ID's as identifiers
14.0 years ago Marc Carlson ★ 7.2k
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0
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1.2k
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Comment: C: visualizing genomic data
14.0 years ago Marc Carlson ★ 7.2k
0
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0
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1.5k
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Comment: C: IlluminaHumanMethylation450k.db Reference Versions
14.0 years ago Marc Carlson ★ 7.2k
0
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1
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1.9k
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Comment: C: GenomicFeatures makeTranscriptDbFromBiomart failure
14.0 years ago Marc Carlson ★ 7.2k
0
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0
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1.0k
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Answer: A: downloading GO from biomart through bioconductor
14.0 years ago Marc Carlson ★ 7.2k
0
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1
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1.1k
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Answer: A: problem with IGH genes in org.Hs.egCHRLOC
14.1 years ago Marc Carlson ★ 7.2k
0
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1
reply
841
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annotation db for miRNA_2 Array
miRNA Annotation miRNA Annotation
14.1 years ago Marc Carlson ★ 7.2k
0
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0
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841
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Answer: A: annotation db for miRNA_2 Array
14.1 years ago Marc Carlson ★ 7.2k
0
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0
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836
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Why are there different number of pathways in pathway2gene and in pathway2name (KEGG.db)?
Pathways Pathways
14.1 years ago Marc Carlson ★ 7.2k
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0
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1.8k
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Answer: A: makeTranscriptDbFromBiomart for Arabidopsis thaliana (plants_mart_10)
14.2 years ago Marc Carlson ★ 7.2k
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0
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1.3k
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Comment: C: AnnBuilder not available
14.2 years ago Marc Carlson ★ 7.2k
0
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2
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1.7k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.2 years ago by ▴ 40 • written 14.2 years ago by ★ 7.2k
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0
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1.7k
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Comment: C: Simple GO pie and GOSim install error
14.2 years ago Marc Carlson ★ 7.2k
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0
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2.1k
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Answer: A: annotation package ?
14.2 years ago Marc Carlson ★ 7.2k
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0
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2.1k
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Comment: C: annotation package ?
14.2 years ago Marc Carlson ★ 7.2k
0
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0
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1.5k
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Comment: C: GOstats with Reactome database?
14.3 years ago Marc Carlson ★ 7.2k
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0
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1.5k
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Comment: C: problem with the KEGGSOAP package
14.3 years ago Marc Carlson ★ 7.2k
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0
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1.1k
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Answer: A: Are bioconductor packages designed for enrichment analysis affected by KEGG priv
14.3 years ago Marc Carlson ★ 7.2k
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0
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1.6k
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Comment: C: Possible problem with Rhesus array annotation package
14.3 years ago Marc Carlson ★ 7.2k
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1
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1.6k
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Answer: A: Possible problem with Rhesus array annotation package
14.3 years ago Marc Carlson ★ 7.2k
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0
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2.8k
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Comment: C: how to extract GO terms at different level of DAG
14.4 years ago Marc Carlson ★ 7.2k
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0
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2.1k
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Answer: A: Log2 fold change single replicate RNA seq
14.4 years ago Marc Carlson ★ 7.2k
738 results • Page 6 of 15
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