User: Mike Smith

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Mike Smith40
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Posts by Mike Smith

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Answer: A: Illumina chip probe sequences
... Hi Pete, I'm not sure if there are any packages which provide the probe sequences, but the annotation files provided by Mark Dunning are based on the files found here : http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html The files have rather a lot of information in them, but you c ...
written 9.3 years ago by Mike Smith40
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Comment: C: Human Gene ST using oligo package
... Hi Javier, You can get a boxplot of the geneFeatureSet and expression set objects using: boxplot(log2(exprs(OligoRaw))) and boxplot(exprs(OligoEset)) respectively. If I do the first command without the log transformation it takes about 10 minutes to plot for some reason, but it does still work. ...
written 9.5 years ago by Mike Smith40
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Answer: A: Illumina bead arrays
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20070824/ 74c75cd3/attachment.pl ...
written 12.3 years ago by Mike Smith40
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Answer: A: beadarray package: problem with bead level data
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20070727/ 9ba04e0d/attachment.pl ...
written 12.3 years ago by Mike Smith40

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