User: Alexander C Cambon

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New User
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Last seen:
10 years ago
Joined:
12 years, 1 month ago
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a**********@louisville.edu

Posts by Alexander C Cambon

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Strange FDR values using GSA package with large numbers of permutations
... I am using the GSA package for gene set analysis. I have normalize data from a microarray experiment with four groups and four replicates (16 total arrays). I downloaded the set of curated gene sets ("c2.all.v2.5.symbols.gmt") from the Broad Institute web page MSigDB (I did register) and read th ...
microarray written 10.1 years ago by Alexander C Cambon30 • updated 10.1 years ago by Wolfgang Huber13k
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Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
... I apologize if this is not the right forum to post this question - I am asking about annotation for a particular kind of Affymetrix array. I have all the files from their site. The problem is not too little information, it is too much information. The array platform is Affymetrix Array "Rat Gene 1 ...
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KEGGSOAP: color.pathway.by.objects
... Hello, I can use the "mark.pathway.by.objects" function in KEGGSOAP to mark objects in a KEGG pathway. That is, the objects I mark in the "object.id.list" show up on the generated KEGG pathway. However, the "color.pathway.by.objects" does not seem to work (at least the way I am thinking it shoul ...
pathways keggsoap written 12.2 years ago by Alexander C Cambon30 • updated 12.2 years ago by John Zhang2.9k

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