User: Janet Young

gravatar for Janet Young
Janet Young730
Reputation:
730
Status:
Trusted
Location:
Fred Hutchinson Cancer Research Center, Seattle, WA, USA
Website:
http://research.fhcrc....
Scholar ID:
Google Scholar Page
Last seen:
6 months ago
Joined:
10 years, 2 months ago
Email:
j******@fhcrc.org

I provide bioinformatics support to members of Harmit Malik's lab. We work on a number of evolutionary questions using diverse tools.

Posts by Janet Young

<prev • 103 results • page 1 of 11 • next >
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binnedaverage - is it possible to add an na.rm option?
... Hi there, I'm using binnedAverage, and would love to see an na.rm option added if possible. I do have a hacked version of binnedAverage that I can use instead, but thought I'd suggest adding na.rm as an enhancement for the existing function.   My motivation is that I have a set of SNP genotype fre ...
genomicranges written 6 months ago by Janet Young730 • updated 6 months ago by Hervé Pagès ♦♦ 13k
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Answer: A: gviz: controlling track labels
... Thanks again - that is fairly close.   I have enough samples (2 groups, 4 samples each) that it'd look better to mimic the horizon type multipanel grouped plot rather than than the overlaid histograms.  I can get something pretty close to what I want just by plotting coverage as separate individual ...
written 15 months ago by Janet Young730
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Answer: A: gviz: controlling track labels
... Thanks again, Florian - that's helpful.   Here's a suggestion for a future enhancement: would it be easy for you to implement a plot type for DataTrack that mimics the coverage track for AlignmentTrack plots?  I love the look of the filled gray polygon, rather than the simple line-only plot that ty ...
written 15 months ago by Janet Young730
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Answer: A: gviz: controlling track labels
... Thanks, Florian - that should let me fix it as needed.  Sorry I missed it in the docs. Unfortunately vertical titles are challenging in my actual use case -  I have rather a lot of tracks I want to show, so some of them are very narrow (8 DNA-seq coverage tracks, 2 or more RNA-seq tracks with cover ...
written 15 months ago by Janet Young730
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Comment: C: gviz: controlling track labels
... having trouble embedding the image: http://imgur.com/1xHYFWh ...
written 15 months ago by Janet Young730
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gviz: controlling track labels
... Hi there, I've just started using gviz - it looks really useful. Thanks for the package! I'm plotting annotations and coverage (from a bam file) and am having trouble to get the labels to show up properly for the coverage tracks. Here's a very simple example that should show what I mean: in this e ...
gviz written 15 months ago by Janet Young730
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Answer: A: GenomicRanges bug in follow?
... Thanks all - much appreciated!  That makes more intuitive sense to me now. ...
written 2.1 years ago by Janet Young730
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Comment: C: GRanges - add names when constructing a new GRanges, rather than afterwards?
... Thanks, Malcolm - I'll go with Michael's method, which is easier to understand (I have to admit that the backtick syntax is mysterious to me right now) ...
written 2.2 years ago by Janet Young730
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Comment: C: GRanges - add names when constructing a new GRanges, rather than afterwards?
... turns out it's easy: sorry that wasn't more obvious to me.  Thanks!   ...
written 2.2 years ago by Janet Young730
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Comment: C: GRanges - add names when constructing a new GRanges, rather than afterwards?
... turns out it's easy: sorry that wasn't more obvious to me.  Thanks!   ...
written 2.2 years ago by Janet Young730

Latest awards to Janet Young

Popular Question 6 months ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Popular Question 6 months ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Popular Question 15 months ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Centurion 2.0 years ago, created 100 posts.
Student 2.3 years ago, asked a question with at least 3 up-votes. For tileGenome for overlapping ranges?
Autobiographer 3.2 years ago, has more than 80 characters in the information field of the user's profile.

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