User: Janet Young

gravatar for Janet Young
Janet Young730
Reputation:
730
Status:
Trusted
Location:
Fred Hutchinson Cancer Research Center, Seattle, WA, USA
Website:
http://research.fhcrc....
Scholar ID:
Google Scholar Page
Last seen:
1 week, 3 days ago
Joined:
10 years, 7 months ago
Email:
j******@fhcrc.org

I provide bioinformatics support to members of Harmit Malik's lab. We work on a number of evolutionary questions using diverse tools.

Posts by Janet Young

<prev • 110 results • page 1 of 11 • next >
0
votes
2
answers
49
views
2
answers
Answer: A: rtracklayer colorByStrand - is it possible to add quotes?
... Thanks, Michael - appreciate it. Yes, I'll start using github instead for stuff like this.    Maybe the github pages are worth a mention on http://www.bioconductor.org/help/support/posting-guide/  ?          ...
written 10 days ago by Janet Young730
0
votes
2
answers
49
views
2
answers
rtracklayer colorByStrand - is it possible to add quotes?
... Hi there, I'm using rtracklayer's export function to get a bed file, and then I upload that file manually to the UCSC genome browser via my web browser.  I am using the trackLine/colorByStrand function - it seems to be almost working fine, but not quite. It would be great if the colorByStrand opti ...
rtracklayer written 11 days ago by Janet Young730
0
votes
1
answers
83
views
1
answers
Comment: C: ensemblVEP supported versions, and troubleshooting
... done (https://github.com/Bioconductor/ensemblVEP/issues/2). thanks again! ...
written 5 weeks ago by Janet Young730
0
votes
1
answers
83
views
1
answers
Comment: C: ensemblVEP supported versions, and troubleshooting
... Thanks, Lori - that did let me troubleshoot successfully. I did just put in a github issue with a request to see the system call - that was really useful once you showed me how to do it using debugonce. I should probably update to VEP v90 soon, but perhaps it's also useful to let you know where I s ...
written 5 weeks ago by Janet Young730
0
votes
1
answer
83
views
1
answer
ensemblVEP supported versions, and troubleshooting
... Hi there,   This page - http://www.bioconductor.org/packages/release/bioc/html/ensemblVEP.html - says that the EnsemblVEP bioconductor package needs v88 of the Ensembl API, but from some of the help pages within ensemblVEP v1.20.0 it looks like maybe v90 is now supported too?   I'm asking because ...
ensemblvep written 5 weeks ago by Janet Young730 • updated 5 weeks ago by shepherl ♦♦ 560
0
votes
3
answers
138
views
3
answers
Answer: A: integer overflow in ChIPpeakAnno assignChromosomeRegion
... Thanks, Jianhong - I appreciate it ...
written 9 weeks ago by Janet Young730
0
votes
3
answers
138
views
3
answers
integer overflow in ChIPpeakAnno assignChromosomeRegion
... Hi there, I'm just starting to explore the ChIPpeakAnno package - it looks really useful: thank you for creating it.  I'm following some of the vignettes and using assignChromosomeRegion to get a first glimpse of where our peaks tend to map: that works well.   What I'd love to do is to see how diff ...
chippeakanno assignchromosomeregion written 9 weeks ago by Janet Young730 • updated 9 weeks ago by Julie Zhu3.8k
0
votes
1
answer
199
views
1
answer
binnedaverage - is it possible to add an na.rm option?
... Hi there, I'm using binnedAverage, and would love to see an na.rm option added if possible. I do have a hacked version of binnedAverage that I can use instead, but thought I'd suggest adding na.rm as an enhancement for the existing function.   My motivation is that I have a set of SNP genotype fre ...
genomicranges written 11 months ago by Janet Young730 • updated 11 months ago by Hervé Pagès ♦♦ 13k
0
votes
5
answers
885
views
5
answers
Answer: A: gviz: controlling track labels
... Thanks again - that is fairly close.   I have enough samples (2 groups, 4 samples each) that it'd look better to mimic the horizon type multipanel grouped plot rather than than the overlaid histograms.  I can get something pretty close to what I want just by plotting coverage as separate individual ...
written 20 months ago by Janet Young730
0
votes
5
answers
885
views
5
answers
Answer: A: gviz: controlling track labels
... Thanks again, Florian - that's helpful.   Here's a suggestion for a future enhancement: would it be easy for you to implement a plot type for DataTrack that mimics the coverage track for AlignmentTrack plots?  I love the look of the filled gray polygon, rather than the simple line-only plot that ty ...
written 20 months ago by Janet Young730

Latest awards to Janet Young

Popular Question 11 months ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Popular Question 11 months ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Popular Question 20 months ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Centurion 2.5 years ago, created 100 posts.
Student 2.7 years ago, asked a question with at least 3 up-votes. For tileGenome for overlapping ranges?
Autobiographer 3.6 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 170 users visited in the last hour