User: JUAN MIGUEL MARIN DIAZARAQUE

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10 years, 9 months ago
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11 years, 6 months ago
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Posts by JUAN MIGUEL MARIN DIAZARAQUE

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Retrieving sequences from NCBI
... Dear users, I do not know whether this is a very simple question but I could not solve by myself... I would like to know if there exists in Bioconductor something like the matlab command "getgenbank". It serves to retrieve sequence information from the GenBank database in a simple way, and to downl ...
geoquery written 10.8 years ago by JUAN MIGUEL MARIN DIAZARAQUE70 • updated 10.8 years ago by Sean Davis21k
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Extracting expressions after a multtest procedure (part2)
... Hello, I think this is a valuable information. Best ----- Mensaje reenviado de jmmarin at est-econ.uc3m.es ----- Fecha: Mon, 17 Mar 2008 23:59:59 +0100 De: "J. Miguel Marin" Responder-A: "J. Miguel Marin" Asunto: Re: [BioC] Extracting expressions after a multtest procedure (part2) ...
cancer multtest written 11.1 years ago by JUAN MIGUEL MARIN DIAZARAQUE70
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Comment: C: Extracting expressions after a multtest procedure (part 2)
... Hello Sean, thank you very much, the command works fine. It is, by very far, faster than the for-option... Best > On Sun, Mar 16, 2008 at 11:56 AM, JUAN MIGUEL MARIN DIAZARAQUE > wrote: >> Hello, >> >> In previous message I wonder how to extract just the expressions of 1 ...
written 11.1 years ago by JUAN MIGUEL MARIN DIAZARAQUE70
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Extracting expressions after a multtest procedure (part 2)
... Hello, In previous message I wonder how to extract just the expressions of 102 genes under two conditions after a multtest procedure. At last, I wrote this unelegant code that seems to work: quedan <- resT[res$adjp[,"BH"]<0.05,] busco <- dimnames(quedan)[[1]] cosa <- NULL for (i in 1 ...
multtest written 11.1 years ago by JUAN MIGUEL MARIN DIAZARAQUE70 • updated 11.1 years ago by Sean Davis21k
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Extracting expressions after a multtest procedure
... Hello, I was trying to reproduce just an example of differential expressions from FDR (false discovery rates) in ALL data (see the book Bioinformatics and Computational Biology solutions using R and Bioconductor of Gentleman et al., p. 232-234). But I am not sure to understand what it makes. It is ...
multtest written 11.1 years ago by JUAN MIGUEL MARIN DIAZARAQUE70
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About a problem with databases
... Hello Dear BioC-community, We are trying to check a non-lineal mapping between the expressions of two sets of the same genes under different conditions. I am afraid that we have a basic knowledge about Bioconductor capacities... We have tried to use the ALL database, but after filtering expression ...
cancer written 11.2 years ago by JUAN MIGUEL MARIN DIAZARAQUE70
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Microarray data with outliers
... Dear members I am trying to check a procedure to identify outliers and natural clusters in microarrays. I have used standard yeast data from Saccharomyces, but they do not have truly outliers. Can anyone indicate me where can I find a database in R or BioConductor which contains outliers? Thank you ...
yeast written 11.5 years ago by JUAN MIGUEL MARIN DIAZARAQUE70 • updated 11.5 years ago by Sean Davis21k

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