User: Paul Hammer

gravatar for Paul Hammer
Paul Hammer220
Reputation:
220
Status:
Trusted
Location:
Last seen:
10 years, 1 month ago
Joined:
11 years, 10 months ago
Email:
p**********@p-t-p.de

Posts by Paul Hammer

<prev • 22 results • page 1 of 3 • next >
1
vote
1
answer
671
views
1
answer
biomaRt * search
... Dear folks, I try to search for all PDE genes within the biomaRt Ensembl database. I am looking for a simple code for searching with the * symbol like under linux (e.g. grep function). here my imaginary, not working code: library(biomaRt) ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensem ...
biomart written 10.1 years ago by Paul Hammer220 • updated 10.1 years ago by steffen@stat.Berkeley.EDU600
0
votes
0
answers
1.3k
views
0
answers
PRO-NEST postdoc position PHILIPS RESEARCH. prostate cancer functional biomarker validation (www.pro-nest.com)
... Dear all, I just received a message from Philips Research for a post doc position. Maybe somebody is searching for a new job challenge. *Science jobs from Philips Research * *Field of Research: prostate cancer, functional biomarker validation, gene expression, imaging, tumor models, functional as ...
cancer prostate written 10.4 years ago by Paul Hammer220
0
votes
0
answers
1.3k
views
0
answers
Post Doc position, Berlin Germany
... Dear Folks, Here is an interesting Post Doc position (see also http://www.nature.com/naturejobs/science/jobs/95047-Post-Doc-Position- Applied-Statistics-And-Bioinformatics): The University for Applied Sciences (UfAS) Wildau (Berlin, Germany) and Philips Research offer a 2-year Post Doc position in ...
sequencing microarray proteomics pathways network cancer written 10.6 years ago by Paul Hammer220
0
votes
2
answers
694
views
2
answers
Comment: C: ...another question about using weights on microarray analysis
... Great Crispin :) here the example: > probeset.to.probe("2390563",as.vector=FALSE) probeset_name idx hit_id seq_region_id chr seq_region_start seq_region_end 1 2390563 1 11794458 226034 1 5761 5785 2 2390563 2 11794456 226034 1 5755 5779 ...
written 10.8 years ago by Paul Hammer220
0
votes
2
answers
694
views
2
answers
Comment: C: ...another question about using weights on microarray analysis
... Hi Crispin, thanks for the quick answer. I tried the function and it worked. e.g. probeset.to.probe("2390563") [1] 11794458 11794456 11794459 11794457 the only point is that no chromosome information is provided. maybe for the next release :) thanks, paul Crispin Miller schrieb: > Hi, > ...
written 10.8 years ago by Paul Hammer220
0
votes
2
answers
694
views
2
answers
Comment: C: ...another question about using weights on microarray analysis
... Hi folks, is there a way to get the exact genome position of a probeset on a affymetrix exon microarray chip. at the moment I do all analysis with the package "exonmap". i know that it is possible to get the information wheater a probeset is intronic, intergenic or exonic, but that is not enough fo ...
written 10.8 years ago by Paul Hammer220
0
votes
1
answer
626
views
1
answer
biomaRt getSequence through genomic position
... hi all, i try to get sequences via the getSequence function from biomaRt. Exact i would like to have the last 5 bases of an exon and the last 5 bases of the following intron. my approach is following: library(biomaRt) ensembl_rat = useMart("ensembl", dataset="rnorvegicus_gene_ensembl") filter_rat ...
biomart written 11.0 years ago by Paul Hammer220 • updated 11.0 years ago by Wolfgang Huber13k
0
votes
1
answer
455
views
1
answer
plot solexa sequence data to genome browser
... Dear all, I have solexa sequence data (rat) and I would like to plot the expression values directly in a genome browser, preferably Ensembl Genome Browser. Now I am looking for packages that deal with this stuff. Until now I've found the packages "rtracklayer", "xmapbridge" and "GenomeGraphs". The ...
written 11.1 years ago by Paul Hammer220 • updated 11.1 years ago by Sean Davis21k
0
votes
1
answer
411
views
1
answers
Answer: A: biomaRt getFeature function
... Dear folks, I've installed the package biomaRt currently and I tried to use the function "getFeature". But I had to notice that this function does not exist. So since what time is that function removed from the package and is there now a comparable function? By the way I try to get out following. ...
written 11.1 years ago by Paul Hammer220
0
votes
1
answer
411
views
1
answer
biomaRt getFeature function
... Dear folks, I've installed the package biomaRt currently and I tried to use the function "getFeature". But I had to notice that this function does not exist. So since what time is that function removed from the package and is there now a comparable function? By the way I try to get out following. ...
biomart written 11.1 years ago by Paul Hammer220

Latest awards to Paul Hammer

Popular Question 10.1 years ago, created a question with more than 1,000 views. For Post Doc position, Berlin Germany

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 218 users visited in the last hour