User: Charity Law
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Posts by Charity Law
... I'm glad to hear that you are finding promising results using diffSplice and diffSpliceDGE from limma/edgeR. It is true that neither of the methods have a cited reference as yet, but we are hoping to write something up for it in the near future. It's not clear to me how DEXSeq's perGeneQvalue funct ...
... Dear Brad, As noted in the help file for voom, voom can take any of the arguments that are passed onto lmFit, including a blocking variable and correlation. Using the limma and edgeR packages, an analysis on read counts using voom and a blocking variable could look something like this: > nf &l ...
... Hi, Is there a function available on Bioconductor to convert gene symbol aliases to official gene symbols? Regards, Charity ...
Latest awards to Charity Law
Popular Question 15 months ago, created a question with more than 1,000 views. For Converting to official gene symbols
Good Answer 3.3 years ago, created an answer that was upvoted at least 5 times. For A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Appreciated 6.5 years ago, created a post with more than 5 votes. For A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Scholar 6.5 years ago, created an answer that has been accepted. For A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Teacher 6.5 years ago, created an answer with at least 3 up-votes. For A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
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