User: Charity Law

gravatar for Charity Law
Charity Law90
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90
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2 months, 2 weeks ago
Joined:
10 years, 4 months ago
Email:
l**@wehi.edu.au

Posts by Charity Law

<prev • 3 results • page 1 of 1 • next >
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Answer: A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
... I'm glad to hear that you are finding promising results using diffSplice and diffSpliceDGE from limma/edgeR. It is true that neither of the methods have a cited reference as yet, but we are hoping to write something up for it in the near future. It's not clear to me how DEXSeq's perGeneQvalue funct ...
written 2.3 years ago by Charity Law90 • updated 2.3 years ago by Gordon Smyth35k
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Answer: A: Block design with voom and limma for multi-level experiment
... Dear Brad, As noted in the help file for voom, voom can take any of the arguments that are passed onto lmFit, including a blocking variable and correlation. Using the limma and edgeR packages, an analysis on read counts using voom and a blocking variable could look something like this: > nf &l ...
written 5.5 years ago by Charity Law90
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Converting to official gene symbols
... Hi, Is there a function available on Bioconductor to convert gene symbol aliases to official gene symbols? Regards, Charity ...
convert written 10.4 years ago by Charity Law90 • updated 10.4 years ago by Tu Kang20

Latest awards to Charity Law

Good Answer 2.3 years ago, created an answer that was upvoted at least 5 times. For A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Scholar 5.5 years ago, created an answer that has been accepted. For A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho

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