User: Nathan S. Watson-Haigh

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Last seen:
10 years, 8 months ago
Joined:
11 years ago
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n*****@sheffield.ac.uk

Posts by Nathan S. Watson-Haigh

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Extracting rows where any column has a non-zero value
... I have what I think should be really obvious, but seem to keep banging my head against a wall....ouch! I want generate a heatplot for a set of genes from a contrast used in my limma analysis. However, I want to limit the heatplot to only those arrays used in the contrast. So I thought I'd be able t ...
written 10.7 years ago by Nathan S. Watson-Haigh40 • updated 10.7 years ago by Sean Davis21k
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Adjusted Expression Values using linear model
... Using limma, my design matrix includes a "contamination" parameter: C.d60 T.d60 C.d67 T.d67 Contamination 1 1 0 0 0 0 2 1 0 0 0 1 3 1 0 0 0 0 4 1 0 0 0 1 5 0 1 0 0 ...
limma written 10.8 years ago by Nathan S. Watson-Haigh40 • updated 10.8 years ago by James W. MacDonald50k
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Comment: C: ReadAffy crashes on mac
... Sorry, I gave you the wrong sessionInfo()! Yes, It's a brand new install of BioC. As it turns out, BioC was compiled using the Intel compiler. Using the GNU compilers, the problem disappears. Has anyone got the Intel compilers to work? Cheers, Nathan -----Original Message----- From: bioconductor ...
written 11.0 years ago by Nathan S. Watson-Haigh40
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ReadAffy crashes on mac
... I'm having a similar (i.e. a segfault when trying to read CEL files) problem reading v4 CEL files on a 64bit machine. Using any of the following methods results in a segfault (bottom): ReadAffy() read.celfile() read.celfile.header() read.celfile() The following methods seem to work ok: readCelHead ...
preprocessing affy convert affxparser affyio bus written 11.0 years ago by Nathan S. Watson-Haigh40 • updated 11.0 years ago by Ben Bolstad1.2k

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