User: Paulo Nuin

gravatar for Paulo Nuin
Paulo Nuin200
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200
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Location:
Canada
Last seen:
4 years, 10 months ago
Joined:
11 years, 3 months ago
Email:
n***@genedrift.org

Posts by Paulo Nuin

<prev • 26 results • page 1 of 3 • next >
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Comment: C: Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
... In this case, the files were provided to me this way and numbered in order, so I ended up with a "lazy loading" procedure. My first time with this type of arrays, and first time with oligo. Thanks for the answer. ...
written 4.9 years ago by Paulo Nuin200
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Comment: C: Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
... Thanks. I had another procedure to annotate, didn't add to the question. Always good to have more ways to do. Thanks for pointing out the B in eBayes and the other tips. ...
written 4.9 years ago by Paulo Nuin200
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Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
... Hi I am trying to do some differential expression analysis on 18 Affy pd.hugene.2.0.st arrays. The data is divided in two groups and I have a very quick and simple script to the analysis: library(oligo) library(human.db0) library(hugene20sttranscriptcluster.db) library(limma) celFiles <- list. ...
limma affymetrix ebayes expression pd.hugene.2.0.st written 4.9 years ago by Paulo Nuin200 • updated 4.9 years ago by Gordon Smyth39k
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Comment: C: arrayQualityMetrics: "All SVG style attribute must have length 1" and other erro
... Installed from source and it works fine now. Just a guide to whoever is having the same error: svn checkout svn://scm.r-forge.r-project.org/svnroot/gridsvg/ cd gridsvg tar -czvf gridsvg.tar.gz pkg/   and install from the generated package.   ...
written 5.0 years ago by Paulo Nuin200
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Comment: C: arrayQualityMetrics: "All SVG style attribute must have length 1" and other erro
... Thanks a lot.  ...
written 5.0 years ago by Paulo Nuin200
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arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
...     Hi I am trying to run arrayQualityMetrics on a number of pd.hugene.2.0.st samples (CEL files) and encountering the same error on two different machines with fresh installs of Bioconductor and arrayQualityMetrics, one with R 3.1.1 and another with 3.1.2 on Macs. The sessionInfo() of the 3.1.1 ...
arrayqualitymetrics software error svg written 5.0 years ago by Paulo Nuin200 • updated 3.4 years ago by Stane40
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MacOS Package installation problems
... It is some type of Mac-only problem that happened in Seattle at the source. Just google for the term and you should get in the first two hits a good answer about it. Cheers Paulo On 2012-05-31, at 10:48 AM, Chinedu Orekie wrote: > I am having the same problem installing packages (Line startin ...
written 7.5 years ago by Paulo Nuin200 • updated 7.5 years ago by Dan Tenenbaum8.2k
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Agi4x44Preprocess/Limma and number of significant p-values
... > Hi everyone I have used Agi4x44Preprocess (script below) to analyze three mouse (mgug4122a) Agilent microarray sets and I want to check if the methods I'm using make sense, as the number of significant p-values I'm getting seems quite high. I'm using Limma for the significance analysis. the l ...
microarray annotation limma agi4x44preprocess written 8.1 years ago by Paulo Nuin200 • updated 8.1 years ago by Wei Xu30
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Agi4x44Preprocess/Limma and number of significant p-values
... Hi everyone I have used Agi4x44Preprocess (script below) to analyze three mouse (mgug4122a) Agilent microarray sets and I want to check if the methods I'm using make sense, as the number of significant p-values I'm getting seems quite high. I'm using Limma for the significance analysis. the lowest ...
microarray annotation limma agi4x44preprocess written 8.1 years ago by Paulo Nuin200 • updated 8.1 years ago by Jarek Bryk110
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Comment: C: arrayQualityMetrics error
... Hi Wolfgang Thanks again. I tried, but I still get an error saying that Cairo cannot generate an executable (or something in that line). I compiled all libraries manually. I contacted our HPC provided and they will set me up with a newer distro of OpenSUSE so I can use this one instead. Thanks a l ...
written 8.8 years ago by Paulo Nuin200

Latest awards to Paulo Nuin

Popular Question 4.9 years ago, created a question with more than 1,000 views. For MacOS Package installation problems
Popular Question 4.9 years ago, created a question with more than 1,000 views. For arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors

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