User: Maarten van Iterson

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Last seen:
9 years, 2 months ago
Joined:
11 years, 3 months ago
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m***************@lumc.nl

Posts by Maarten van Iterson

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Answer: A: simulated array data
... Hello Guido, For simulation of microarray data we use the approach described by M. Langaas(2005, Journal of the Royal Statistical Society Series B). An R implemenation can be found in scripts that were provided by an article of us see: http://www.humgen.nl/MicroarrayAnalysisGroup.html under section ...
written 9.2 years ago by Maarten van Iterson60
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Comment: C: Problem with library(SSPA)
... Hello Samuel, You could solve this problem by first loading package Biobase. Thank you for noticing this problem, I will solve it in the next release of BioConductor. I you have any other questions on the package please ask. Kind regards, Maarten -- Maarten van Iterson Center for Human and Clin ...
written 9.5 years ago by Maarten van Iterson60
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Comment: C: lattice and base-graphics using gridBase
... Hi Paul Murrell, Thanks for your reply this is exactly what I was looking for. To answer your question: I prefer the default graphical parameters of the boxplot-function and tried to reproduce these using the bwplot (and trellis.par.set) but didn't succeed and thought that combining both was maybe ...
written 9.6 years ago by Maarten van Iterson60
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lattice and base-graphics using gridBase
... Dear list, I'm trying to combine lattice and base-graphics following the example from Paul Murrell's R Graphics (B.1.2). The question I have is how to add the y-axis from the base-graphics to the lattice plot below? library(gridBase) library(lattice) data <- list(A=matrix(rnorm(8*100, 1, 1), ...
written 9.6 years ago by Maarten van Iterson60 • updated 9.6 years ago by James W. MacDonald52k
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SIM new package for Statistical Integration of Microarrays
... dear all, The Statistical Integration of Microarrays (SIM) package implements methods to simultaneously analyze DNA copy number and RNA expression microarray data, as described in Menezes et al. We propose the use of a random-effects model to fit the association between copy number and gene express ...
snp microarray visualization cancer written 11.2 years ago by Maarten van Iterson60

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