User: Gábor Csárdi

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New User
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Last seen:
10 years, 3 months ago
Joined:
10 years, 9 months ago
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g***********@unil.ch

Posts by Gábor Csárdi

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Comment: C: readChp (affxparser) segfaults
... Kasper, thanks. Btw. is there anything against reading in the raw data from the .chp files, besides the called genotype? I have a patch for this if you are interested. Best, Gabor On Mon, May 11, 2009 at 2:14 AM, Kasper Daniel Hansen wrote: > Fixed in the devel branch, affxparser version 1.17. ...
written 10.3 years ago by Gábor Csárdi60
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readChp (affxparser) segfaults
... Dear All, I am trying to read in a .chp file with readChp from the affxparser package, without much success. It used to work fine, but for this new file (and a lot of other new files as well) it segfaults. The file is for the Affymetrix 5.0 SNP chip, and it was produced by Affymetrix Power Tools. ...
snp cdf affxparser written 10.3 years ago by Gábor Csárdi60 • updated 10.3 years ago by Kasper Daniel Hansen6.4k
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Creating annotation packages
... Marc, thanks, finally I had time for this project. Things went well, mostly, apart from some minor tweaks that I needed. createSimpleBimap() is too simple for me, I have more difficult maps, so I could not use that, but managed to call back to (internal) functions of AnnotationDbi instead. I have ...
mirna annotation annbuilder annotationdbi written 10.5 years ago by Gábor Csárdi60
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Comment: C: Creating annotation packages
... Sean, looks great, thanks, G. On Fri, Jan 30, 2009 at 5:22 PM, Sean Davis wrote: > > > On Fri, Jan 30, 2009 at 11:13 AM, G?bor Cs?rdi wrote: >> >> Dear All, >> >> I am trying to create an annotation package that contains predicted >> miRNA targets, basically ...
written 10.6 years ago by Gábor Csárdi60
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Creating annotation packages
... Dear All, I am trying to create an annotation package that contains predicted miRNA targets, basically it would be a mapping between Entrez Gene IDs and miRNA families, for a couple of organisms, together with some additional info or course. I am trying to make use of the AnnBuilder package, but c ...
mirna annotation annbuilder written 10.6 years ago by Gábor Csárdi60 • updated 10.6 years ago by Sean Davis21k
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readChp in affxparser
... Dear All, I'm trying to read a CHP file produced by Affymetrix Genotyping Console software. It seems that readChp can only read the summary information from the file, is that correct, or am I doing something wrong? Is there another package or piece of software that can read these files? Thanks, Gab ...
written 10.8 years ago by Gábor Csárdi60 • updated 10.8 years ago by Gábor Csárdi90

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