User: Harry Mangalam
Harry Mangalam • 70
- Reputation:
- 70
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- New User
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- Last seen:
- 9 years, 2 months ago
- Joined:
- 11 years ago
- Email:
- h*************@uci.edu
Posts by Harry Mangalam
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... Yes, happy to say that updating the AnnotationDbi worked on both
platforms. Thanks very much for the attention and fix!
hjm
On Wednesday 22 September 2010 12:22:14 James W. MacDonald wrote:
> > I think annoStartupMessages was added in AnnotationDbi 1.10.1, so
> > perhaps this is just ...
written 9.2 years ago by
Harry Mangalam • 70
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... Hi Jim,
Thanks for the rapid reply, info and pointers.
I tried to take your advice and on a larger machine (due to malloc
errors on the 1st - new sessionInfo() below) I can get a bit further
but still can't convince arrayQualityMetrics() to take or recognize
the appropriate cdf env.
While I incl ...
written 9.2 years ago by
Harry Mangalam • 70
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... Hi BioC
(sessionInfo() at bottom)
I'm trying to help a group here do some QC on their affy datasets
derived from the mogene10stv1 array set. This array is not in
mainstream BioC support but I've created and installed the CDF
environment for that array:
> make.cdf.package("MoGene-1_0-st-v1.r3 ...
written 9.2 years ago by
Harry Mangalam • 70
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... Hi there (sessionInfo() at bottom)
I'm trying to help a group here do some QC on their affy datasets
derived from the mogene10stv1 array set. This array is not in
mainstream BioC support but I've created and installed the CDF
environment for that array:
> make.cdf.package("MoGene-1_0-st-v1.r3 ...
written 9.2 years ago by
Harry Mangalam • 70
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... http://www.nytimes.com/2009/01/07/technology/business-
computing/07program.html?pagewanted=2&_r=1
Well-deserved!
--
Harry Mangalam - Research Computing, NACS, E2148, Engineering Gateway,
UC Irvine 92697 949 824-0084(o), 949 285-4487(c)
---
Good judgment comes from experience;
Experience comes ...
written 10.9 years ago by
Harry Mangalam • 70
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... Hi All,
I've been trying to get affylmGUI to run on my laptop (3GB, Ubuntu
8.04, R as below:
=====
> sessionInfo()
R version 2.8.0 (2008-10-20)
i686-pc-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US
.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER= ...
written 10.9 years ago by
Harry Mangalam • 70
• updated
10.9 years ago by
Wolfgang Huber ♦ 13k
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... Like Rob Dunne previously, I'm trying to use pdInfoBuilder to generate
a pkg for the RaGene-1_0-st-v1 series, but am getting the same error
that he was finally able to resolve. Unlike him, I am not.
R version 2.6.2 (2008-02-08) (from Ubuntu 8.04.1 deb)
pdInfoBuilder 1.6.0
> library(pdInfoBuilde ...
written 11.1 years ago by
Harry Mangalam • 70
• updated
11.1 years ago by
Sean Davis ♦ 21k
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