User: Harry Mangalam

gravatar for Harry Mangalam
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9 years, 1 month ago
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Posts by Harry Mangalam

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Comment: C: QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
... Yes, happy to say that updating the AnnotationDbi worked on both platforms. Thanks very much for the attention and fix! hjm On Wednesday 22 September 2010 12:22:14 James W. MacDonald wrote: > > I think annoStartupMessages was added in AnnotationDbi 1.10.1, so > > perhaps this is just ...
written 9.1 years ago by Harry Mangalam • 70
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Comment: C: QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
... Hi Jim, Thanks for the rapid reply, info and pointers. I tried to take your advice and on a larger machine (due to malloc errors on the 1st - new sessionInfo() below) I can get a bit further but still can't convince arrayQualityMetrics() to take or recognize the appropriate cdf env. While I incl ...
written 9.1 years ago by Harry Mangalam • 70
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QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
... Hi BioC (sessionInfo() at bottom) I'm trying to help a group here do some QC on their affy datasets derived from the mogene10stv1 array set. This array is not in mainstream BioC support but I've created and installed the CDF environment for that array: > make.cdf.package("MoGene-1_0-st-v1.r3 ...
cdf affy written 9.1 years ago by Harry Mangalam • 70
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Answer: A: QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
... Hi there (sessionInfo() at bottom) I'm trying to help a group here do some QC on their affy datasets derived from the mogene10stv1 array set. This array is not in mainstream BioC support but I've created and installed the CDF environment for that array: > make.cdf.package("MoGene-1_0-st-v1.r3 ...
written 9.1 years ago by Harry Mangalam • 70
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OT: R in NYTimes..!
... http://www.nytimes.com/2009/01/07/technology/business- computing/07program.html?pagewanted=2&_r=1 Well-deserved! -- Harry Mangalam - Research Computing, NACS, E2148, Engineering Gateway, UC Irvine 92697 949 824-0084(o), 949 285-4487(c) --- Good judgment comes from experience; Experience comes ...
written 10.8 years ago by Harry Mangalam • 70
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affylmGUI segfault on "pd.ragene.1.0.st.v1"
... Hi All, I've been trying to get affylmGUI to run on my laptop (3GB, Ubuntu 8.04, R as below: ===== > sessionInfo() R version 2.8.0 (2008-10-20) i686-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US .UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER= ...
normalization go cdf affy affylmgui written 10.8 years ago by Harry Mangalam • 70 • updated 10.8 years ago by Wolfgang Huber ♦ 13k
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Continued problems with pdInfoBuilder
... Like Rob Dunne previously, I'm trying to use pdInfoBuilder to generate a pkg for the RaGene-1_0-st-v1 series, but am getting the same error that he was finally able to resolve. Unlike him, I am not. R version 2.6.2 (2008-02-08) (from Ubuntu 8.04.1 deb) pdInfoBuilder 1.6.0 > library(pdInfoBuilde ...
pdinfobuilder written 10.9 years ago by Harry Mangalam • 70 • updated 10.9 years ago by Sean Davis ♦ 21k

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