User: Rhoda Kinsella

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Posts by Rhoda Kinsella

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Comment: C: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
... Hi Hervé, For your information, Arek from the BioMart project posted this on the biomart users mailing list. It explains the recent update delays: Dear All, I would like to apologize for the delays with the BioMart services updates that generated a number of complaints on the BioMart users mailing ...
written 7.0 years ago by Rhoda Kinsella660
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Answer: A: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
... Hi Hervé and Malcolm, I have contacted the Ensembl genomes team who produce this database and have asked them to respond to you with an update. Regards Rhoda On 13 Mar 2012, at 20:31, Hervé Pagès wrote: > Hi Malcolm, Rhoda, > > Did you hear back from the Ensembl helpdesk about this issue? ...
written 7.0 years ago by Rhoda Kinsella660
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Answer: A: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
... Hi Malcolm and Hervé This appears to be a data issue with the Drosophila core database which was then propagated into BioMart. I have forwarded the issue to the Ensembl Genomes project as they maintain this database and they will respond as soon as possible. Regards Rhoda On 7 Feb 2012, at 21:35, ...
written 7.1 years ago by Rhoda Kinsella660
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Answer: A: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
... Hi Malcolm and Herv?, We have received your helpdesk ticket and thank you for the detailed example. We will look into the issue and get back to you as soon as possible. Regards Rhoda > Herve, Thanks so much for digging into this. > > Rhonda, I had submitted a ticket as suggested to Ensemb ...
written 7.1 years ago by Rhoda Kinsella660
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Answer: A: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some tr
... Hi Malcolm and Marc, Please submit an Ensembl helpdesk ticket about this issue along with a detailed example to (helpdesk@ensembl.org) and we will look into it. Kind regards Rhoda On 3 Feb 2012, at 20:32, Cook, Malcolm wrote: > Hi Marc, and other `library(GenomicFeatures)` users working in fly ...
written 7.1 years ago by Rhoda Kinsella660
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Answer: A: biomaRt query ??
... Hi Tim As you are only asking for the DBASS5 name and id, you will only get the aberrant 5' splice sites generated as a result of disease-causing mutations in human genes (see here for more information: http://www.som.soton.ac.uk/research/geneticsdiv/dbass5/) . You should take a look at the transcri ...
written 7.4 years ago by Rhoda Kinsella660
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Comment: C: Connecting to Uniprot Biomart using biomaRt
... HI Dan and Kenny, I have received a message from the UniProt team to say that the UniProt mart is now back up and running. Regards Rhoda On 25 Oct 2011, at 08:55, Rhoda Kinsella wrote: > Hi Dan and Kenny > The message I sent about downtime related to the Ensembl marts only > as this is wh ...
written 7.4 years ago by Rhoda Kinsella660
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Comment: C: Connecting to Uniprot Biomart using biomaRt
... Hi Dan and Kenny The message I sent about downtime related to the Ensembl marts only as this is what I maintain at the EBI. I have taken a look at the UniProt mart at the EBI and there seems to be a problem with it. I will contact the UniProt team and let them know there is an issue. Thank you for r ...
written 7.4 years ago by Rhoda Kinsella660
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Comment: C: Ensembl websites offline for maintenance
... Hi Robert, The release 63 archive registry has now been fixed. Regards Rhoda On 20 Oct 2011, at 15:30, Rhoda Kinsella wrote: > Hi Robert > It looks like the registry information for that archive is not > correct. I will forward this bug to our web team and let you know > when it has be ...
written 7.4 years ago by Rhoda Kinsella660
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Comment: C: Ensembl websites offline for maintenance
... Hi Robert It looks like the registry information for that archive is not correct. I will forward this bug to our web team and let you know when it has been fixed. Apologies for any inconvenience. Regards Rhoda On 20 Oct 2011, at 15:17, Robert Castelo wrote: > Dear Rhoda, > > i was unsucce ...
written 7.4 years ago by Rhoda Kinsella660

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