User: cristina della beffa

Reputation:
30
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New User
Location:
Germany
Last seen:
5 months, 3 weeks ago
Joined:
8 years, 8 months ago
Email:
c******************@gmail.com

Posts by cristina della beffa

<prev • 12 results • page 1 of 2 • next >
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Job: Postdoc Positions in Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
... Postdoc Positions in Computational Biology The Department for Computational Biology of Infection Research Group at HZI is offering a postdoc position to work on topics in computational metagenomics and computational infection research. The lab develops software and algorithms, ...
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library(BioNet): which are the additional parameters which can be specified in the function plotModule()?
... Hi, I´m wondering which are the graphical parameters which can be additionally specified in the function plotModule() when in the help page I find  "... Other graphic parameters for the plot."   Thank you.   Best wishes,             Cristina   ...
bionet plotmodule written 21 months ago by cristina della beffa30
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Answer: A: library(clusterProfiler) cnetplot(fixed = F): why can´t I get the color legend?
... Hi, the problem is that plot.igraph() in cnetplot(fixed = TRUE) is suitable only for small networks. It is not usable with bigger networks, which are initially unreadable (with any kind of layout) and one can only separate the branches manually, with the interactive plot. Thank you for your fast ...
written 22 months ago by cristina della beffa30
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library(clusterProfiler) cnetplot(fixed = F): why can´t I get the color legend?
... Hi, I´m trying to get the colors legend for a network made with cnetplot(fixed = F), internally calling tkplot(), to make an interactive plot. I tried to modify netplot(), called by cnetplot_internal(), called by cnetplot(), adding, after tkplot(), the same lines which follow plot.igraph() - for ...
clusterprofiler tkplot written 22 months ago by cristina della beffa30
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Answer: A: enrichGO() for unsupported organisms - library(clusterProfiler)
... Hi, I´m working with Streptococcus pyogenes. Ok, thanks, I will use blastGO to annotate it my self and then try enrichGO.   Best,          Cristina    ...
written 2.3 years ago by cristina della beffa30
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Answer: A: cnetplot() - library(clusterProfiler)
... cnetplot(fixed = F) ...
written 2.3 years ago by cristina della beffa30
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cnetplot() - library(clusterProfiler)
... Good afternoon, I have been using the function cnetplot(fixed = T) to draw an interactive plot and I was wondering why it is only possible to save it in EPS format and not in PNG or any other image format. Furthermore the network I created is too crowded and I could not find a layout to make it mo ...
network clusterprofiler written 2.3 years ago by cristina della beffa30
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enrichGO() for unsupported organisms - library(clusterProfiler)
... Good afternoon, I recently found the following document (within the clusterProfiler folders) "clusterProfiler_for_unsupported_organisms.pdf" and I´m trying now to use the enrichGO() function, which does not work with my organism yet.   The databases pointed out in the example: "bacteria_mart_14 ...
annotation go clusterprofiler written 2.3 years ago by cristina della beffa30
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Answer: A: buildKEGGmap doesn´t work - library(clusterProfiler)
... Thank you very much for the link and support, I will try to use enrichKEGG.   Best,           Cristina     ...
written 2.4 years ago by cristina della beffa30
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buildKEGGmap doesn´t work - library(clusterProfiler)
...   Good morning, I would like to use the buildKEGGmap() function from the package clusterProfiler, but the following error comes up library(clusterProfiler) buildKEGGmap Error: could not find function "buildKEGGmap" sessionInfo() R version 3.2.0 (2015-04-16) Platform: x86_64-w64-mingw32/x64 (64- ...
clusterprofiler software error written 2.4 years ago by cristina della beffa30 • updated 2.4 years ago by Guangchuang Yu700

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