User: Dan Strumpf

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Dan Strumpf70
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9 years, 6 months ago
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10 years, 5 months ago
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d*******@uhnresearch.ca

Posts by Dan Strumpf

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Comment: C: Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
... Thanks, Herve! I'll check it and get back to you if need. Cheers, Dan Hervé Pagès wrote: > Hi Dan, > > Thanks for reporting this. > > At the time I made SNPlocs.Hsapiens.dbSNP.20090506 (back in June 2009), > I dropped it in BioC release (BioC 2.4 at that time) but I apparently > ...
written 9.5 years ago by Dan Strumpf70
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Answer: A: Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
... Thanks for your prompt replies Sean and James. I've got the package information from a previous mailing list message by Herve Pages (the one you've pointed out, Sean), and therefore I thought it should be available. Dan Sean Davis wrote: > Forgot to cc group on this.... > > > -------- ...
written 9.5 years ago by Dan Strumpf70
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cannot install SNPlocs.Hsapiens.dbSNP.20090506
... Hi, received these messagages when trying to install SNPlocs.Hsapiens.dbSNP.20090506 Any tips? Thanks, Dan > source("http://bioconductor.org/biocLite.R") Warning messages: 1: In safeSource() : Redefining ?biocinstall? 2: In safeSource() : Redefining ?biocinstallPkgGroups? 3: In safeSource() ...
written 9.5 years ago by Dan Strumpf70 • updated 9.5 years ago by James W. MacDonald50k
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Comment: C: use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
... Dear Christian, Thanks for clarifying those points about xps. I'll look up the example scripts and will follow-up with you as needed. Cheers, Dan cstrato wrote: > Dear Dan > > As the author of xps please allow me to answer your follow-up questions > regarding xps: > > Michal ha ...
written 10.5 years ago by Dan Strumpf70
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Comment: C: use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
... Hi Jim, Thanks for your reply and insight. I will check out your suggestions, and evaluate to best strategy for generating the expression data set and then analysing it 'externally'. Best, Dan James W. MacDonald wrote: > Hi Dan, > > Dan Strumpf wrote: >> Hello, >> >> I ...
written 10.5 years ago by Dan Strumpf70
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Answer: A: use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
... Hi Michal, Thanks for your reply and suggestions! Please see my further comments/questions below in UPPER: xps uses the "most proper" pgf and bkg Affymetrix annotation SO THESE WOULD BE WHATEVER AFFYMETRIX IS PROVIDING - NOT REMAPPED FILES, CORRECT? IF YOU'RE FAMILIAR WITH XPS, COULD YOU INDICATE ...
written 10.5 years ago by Dan Strumpf70
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use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
... Hello, I am new to exon array analysis and have used the huex10stv2cdf_1.15.0.tar.gz package (downloaded from http://aurora.lbl.gov/static/huex10stv2cdf_1.15.0.tar.gz )as a cdf source/mapping for processing Human exon array data within 'affy' package. Processing went smoothly without any error mess ...
cdf limma rankprod written 10.5 years ago by Dan Strumpf70 • updated 10.5 years ago by James W. MacDonald50k

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