User: Colin A. Smith

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Posts by Colin A. Smith

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Comment: C: annaffy - saveHTML changed behaviour in newer versions
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20071008/ 1e24be21/attachment.pl ...
written 12.0 years ago by Colin A. Smith220
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Answer: A: annaffy - saveHTML changed behaviour in newer versions
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20071008/ 44020e02/attachment.pl ...
written 12.0 years ago by Colin A. Smith220
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amigo links: gene ontology annotation for probes
... Yvonne- It looks like they changed their URL format. Please look for a fix in the next couple days in either annaffy 1.6.2 (Release 1.9) or 1.7.3 (Devel 2.0). Cheers. -Colin On Feb 19, 2007, at 4:49 , Yvonne J.K. Edwards wrote: > Hi, > > I am using Bioconductor to annotate some probes ...
annotation go biobase annotate annaffy written 12.7 years ago by Colin A. Smith220 • updated 12.7 years ago by Yvonne J.K. Edwards10
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Answer: A: webbioc chicken
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written 12.7 years ago by Colin A. Smith220
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Answer: A: WebbioC for windows and other questions
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written 13.6 years ago by Colin A. Smith220
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coerce aafTable object into dataframe (annaffy)
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20060228/ 50dd6043/attachment.pl ...
written 13.7 years ago by Colin A. Smith220
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Answer: A: coerce aafTable object into dataframe (annaffy)
... Georg- > So the question arises: > Is there a way to merge aafTables of different sizes? Now there is. I implemented the all, all.x, and all.y options in annaffy's merge function. Before I commit the change, it would be great if you could test out the modified function to see if it will work ...
written 13.7 years ago by Colin A. Smith220
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Answer: A: annaffy: YEAST vs. Affy YEAST_2 annotation
... Jacob- The YEAST annotation package is a bit unlike all the others in that it does not include the "*SYMBOL" environment mapping probe set ids onto commonly used abbreviations for genes. In all the other annotation packages, using the "*SYMBOL" environment was an easy way to get a listing of every ...
written 14.7 years ago by Colin A. Smith220
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Answer: A: webbioc upload manager error
... Jake- That happens when the upload manager can't create a new directory to store session contents. Check to make sure that $UPLOAD_DIR is set correctly in the Site.pm configuration file. Also check to make sure that directory is writable by Apache (user www or group www). -Colin On Jan 21, 2005, ...
written 14.8 years ago by Colin A. Smith220
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Answer: A: bioconductor on xserve
... Guoneng- I haven't run Bioconductor scripts on Xserve hardware specifically. I have however successfully set up a test installation of webbioc on a small cluster of a G3 and G4 Power Mac linked together with the Sun Grid Engine. Your best bet is probably installing the prebuilt R package (from CRA ...
written 14.9 years ago by Colin A. Smith220

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