User: mattia pelizzola

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Posts by mattia pelizzola

<prev • 21 results • page 1 of 3 • next >
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Answer: A: methylPipe: how BSprepare handles zeros
... Hi Jay, we considered that in the absence of #C there is no evidence supporting the presence of an mC call at that position. Thus, we reasoned to be useless to test for it. You can consider this as a pre-processing filter, such as avoiding testing for differential expression for those genes that ha ...
written 14 days ago by mattia pelizzola200
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Answer: A: Problem with using `GRheatmapData` function in compEpiTools package
... Hi, the method is called "heatmapData", not "GRheatmapData", best, mattia ...
written 7 weeks ago by mattia pelizzola200
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Job: PhD computational position - Milan
... 4 years PhD position in Computational Biology at SEMM (European School of Molecular Medicine), located at the IFOM-IEO-IIT campus in Milan, Italy   Online application Deadline August 2nd 2017   The role of RNA methylation in the control of mRNA synthesis, processing and degradation   The fine ...
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Job: Postdoc positions - Computational Biology - Center for Genomic Science, Milan, Italy
... Hello, three postdoc positions in computational biology are available at the Center for Genomic Science in Milan (Italy): 1. Development of computational methods to investigate the interplay between epigenetic and genetic layers and their role in tumor progression, by integrating genomic, ...
sequencing cancer written 4.0 years ago by mattia pelizzola200
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problem with locateVariants
... Hello, I am getting no matches using locateVariants, while I would expect some. Here is one example: gr= GRanges(seqnames=Rle('chr12'), ranges= IRanges(33804059, 33804059)) txdb= TxDb.Mmusculus.UCSC.mm9.knownGene length(locateVariants(query= gr, subject= txdb, region=AllVariants())) [1] 0 Warning ...
written 4.0 years ago by mattia pelizzola200
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counting BAM reads in a set of genomic regions
... Hi everybody, given a BAM file and a set of genomic regions stored in a GRanges object, I would like to know your opinion/experience on the fastest (and memory parsimonious) way in BioC for counting the number of reads for each region. Thanks! mattia [[alternative HTML version deleted]] ...
written 4.8 years ago by mattia pelizzola200 • updated 4.8 years ago by Martin Morgan ♦♦ 20k
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Post-Doc - Milan: miRNAs and non-coding RNAs identification from RNAseq data
... *Post-Doc - Milan: miRNAs and non-coding RNAs identification from RNAseq data* A position in computational biology is available at the European Institute of Oncology (IEO). Our group is engaged in a number of projects in areas of cancer genomics, development and stem cells. These projects incl ...
sequencing rnaseq mirna cancer written 5.3 years ago by mattia pelizzola200
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[JOB] NGS and computational genomics postdoc positions
... Hi, several post-doctoral positions are available in the Computational Epigenomics unit at the Center for Genomic Science of IIT@SEMM ( http://genomics.iit.it/groups/computational-epigenomics.html), a new outstation of the Italian Institute of Technology located in the IFOM- IEO Campus in Milan (h ...
cancer written 5.5 years ago by mattia pelizzola200
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Computational Biologist position available in Screening Unit in Milan, Italy
... Computational Biologist position available in Screening Unit in Milan, Italy: http://www.iit.it/en/resources/openings/iit-centres/iitsemm /computational-biologist-semm.html IIT at SEMM is a research outstation of the Fondazione Istituto Italiano di Tecnologia located in Milan at the IFOM-IEO-CAMP ...
cancer written 6.1 years ago by mattia pelizzola200
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4 PhD positions in cancer computational biology
... Dear all,* * enrollment is open for 4 PhD positions in cancer computational biology at the IFOM-IEO campus in Milan, see the ad below. Best, mattia ** *############################# * * * *Cancer computational biology* Four PhD positions in Computational Biology are available at the I ...
sequencing epigenetics cancer written 6.2 years ago by mattia pelizzola200

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