User: Mark Dunning

gravatar for Mark Dunning
Mark Dunning1.1k
Reputation:
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Location:
Sheffield, Uk
Website:
http://sbc.shef.ac.uk/
Twitter:
@DrMarkDunning
Last seen:
3 days, 7 hours ago
Joined:
8 years, 11 months ago
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m***********@gmail.com

Bioinformatics Core Director, The University of Sheffield

Posts by Mark Dunning

<prev • 97 results • page 1 of 10 • next >
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Error: C stack usage when installing Txdb package
... Hi all, I'm trying to install the TxDb.Hsapiens.UCSC.hg38.knownGene package, but getting pretty stumped at an error to do with C stack usage.   source("http://www.bioconductor.org/biocLite.R") biocLite("TxDb.Hsapiens.UCSC.hg38.knownGene")   BioC_mirror: https://bioconductor.org Using Biocon ...
org.hs.eg.db txdb.hsapiens.ucsc.hg38.knowngene written 10 weeks ago by Mark Dunning1.1k • updated 10 weeks ago by Simon Anders3.4k
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Job: Sheffield Bioinformatics Core Analyst
... The Bioinformatics Core at The University of Sheffield is looking for an Analyst with strong statistical skills and awareness of best-practices and reproducible research. Please see below for a summary and how to apply Summary The University of Sheffield and its associated Medical School and Hospi ...
job bioinformatician job bioinformatics core written 12 weeks ago by Mark Dunning1.1k
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Comment: C: Probe summerization of Human HT-12 V4 BeadChip arrays
... What version of Bioconductor are you using? It seems fine for me on Bioconductor 3.6.   library(GEOquery) gse <- getGEO("GSE33126")[[1]] eset <- as(gse, "ExpressionSetIllumina") sessionInfo() I wouldn't recommend averaging the probes for the same gene though. Some of the probes on these ar ...
written 3 months ago by Mark Dunning1.1k
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Job: Sheffield Bioinformatics Core Analyst
... The Bioinformatics Core at The University of Sheffield is looking for an Analyst. If best-practice Bioinformatics and reproducible research is your thing, check-out the full details below:- http://www.jobs.ac.uk/job/BDQ610/sheffield-bioinformatics-core-analyst/   ...
job data analyst bioinformatics core written 6 months ago by Mark Dunning1.1k
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Job: Sheffield Bioinformatics Core Analyst
... The Bioinformatics Core at The University of Sheffield is looking for an Analyst. If best-practice Bioinformatics and reproducible research is your thing, check-out the full details below:- http://www.jobs.ac.uk/job/BBM484/sheffield-bioinformatics-core-analyst/ ...
job data analyst uk bioinformatics core written 9 months ago by Mark Dunning1.1k
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Answer: A: beadarray: readIllumina with sample sheet broken due to Illumina switching to 12
... Hi Simon, So sorry for taking so long to get around to this. Did fixing the misplaced parentheses work for you? I'm afraid I don't have access to data where the chip IDs are 12 digits. If you could share some with me I would be able to test the code. Regards, Mark ...
written 9 months ago by Mark Dunning1.1k
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Answer: A: Normalization of Illumina Microarray Data
... The "raw data" for this dataset seem to be the annotation files for the arrays, and not the raw intensities at all. So not helpful for analysis. However, you can use the GEOquery package to import the normalised intensities library(GEOquery) remotefile <- "ftp://ftp.ncbi.nlm.nih.gov/geo/series ...
written 11 months ago by Mark Dunning1.1k
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News: Course: Analysis of RNA-seq and ChIP-seq data, March 29th - April 1st, Oeiras, Portugal
... Hi all, Registration is open for a four-day workshop on the analysis of RNA- and ChIP-seq data in Bioconductor in the pleasant surroundings of Oeiras (nr Lisbon) Portugal. We will be covering the basics of NGS analysis in Bioconductor, quality assessment of NGS data and workflows for RNA-seq and Ch ...
news workshop course written 24 months ago by Mark Dunning1.1k
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News: F1000 research sponsored prize for contribution to Support forum
... Hi all, Just to let you know that during the European Bioconductor Developers meeting next week, a prize will be awarded to the individual with greatest contribution to this support forum. The prize is being sponsored by F1000 research, who as you probably know recently launched a dedicated Biocon ...
news written 2.2 years ago by Mark Dunning1.1k
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Comment: C: biomaRt package problem
... Ooops. Sorry didn't see that. Thanks Mark ...
written 2.2 years ago by Mark Dunning1.1k

Latest awards to Mark Dunning

Appreciated 2.2 years ago, created a post with more than 5 votes. For F1000 research sponsored prize for contribution to Support forum
Appreciated 2.4 years ago, created a post with more than 5 votes. For European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
Autobiographer 3.4 years ago, has more than 80 characters in the information field of the user's profile.

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