User: Min-Han Tan

gravatar for Min-Han Tan
Min-Han Tan40
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40
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9 years, 2 months ago
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10 years, 4 months ago
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m*********@gmail.com

Posts by Min-Han Tan

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Comment: C: Bioconductor / plotting SNPs, runs of homozygosity
... I apologize. To clarify - I have runs of homozygosity data that vary in terms of cases/control ratios. (in the example below, it would be 5 cases: 4 controls for this particular pool). Ideally, I would like to be able to plot for each chromosome a graph - y axis being the case/control ratio; x axi ...
written 9.2 years ago by Min-Han Tan40
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Bioconductor / plotting SNPs, runs of homozygosity
... Good afternoon all, Sorry to trouble you all. I am quite new to plotting high throughput SNPs / chromosome locations, and am trying to visualize some SNP data generated by Plink. (Illumina 330K) I am wondering which package would be most useful (and ideally Illumina friendly). I looked at geneplot ...
snp geneplotter snpchip written 9.2 years ago by Min-Han Tan40 • updated 9.2 years ago by Vincent J. Carey, Jr.6.3k
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Installation of a custom cdf hs133phsentrezgcdf
... Good morning, Sorry to trouble the list. My overall goal is to obtain a normalized data set.I would like to do it using a custom cdf. hs133phsentrezgcdf. I am using R 2.9.0 on SUSE Linux 10.1. (newbie to Linux, would prefer to use Windows, but it can't manage the memory requirements for 150 HGU133 ...
hgu133plus2 cdf written 10.3 years ago by Min-Han Tan40 • updated 10.3 years ago by Saroj K Mohapatra400
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Question about using oligo and SNPchip for copy number analysis
... Good morning, I apologize for troubling the list. I have researched this issue for a day, and spent some time troubleshooting but am unable to locate the answer. I am using R 2.7.2, Bioconductor 2.2 with oligo package version 1.4 and SNPchip 1.4. I am new to high throughput SNP analysis. My goal i ...
snp cancer graph oligo snpchip oligoclasses vanillaice crlmm written 10.4 years ago by Min-Han Tan40

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Popular Question 9.2 years ago, created a question with more than 1,000 views. For Bioconductor / plotting SNPs, runs of homozygosity

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