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User: Steve Pederson
Steve Pederson • 140
- Reputation:
- 140
- Status:
- Trusted
- Location:
- Australia
- Website:
- https://www.adelaide.e...
- Last seen:
- 3 days, 4 hours ago
- Joined:
- 9 years, 8 months ago
- Email:
- s***************@adelaide.edu.au
Posts by Steve Pederson
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8
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0
answers
255
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... The fourth Bioconductor Asia meeting (https://www.abacbs.org/biocasia2018/) will be held on Friday 30th November 2018 in Melbourne, Australia as a satellite event to ABACBS 2018 (https://www.abacbs.org/conference2018/about/). Speakers for the event include Prof Martin Morgan and A/Prof Stephanie Hic ...
written 5 months ago by
Steve Pederson • 140
• updated
12 weeks ago by
Gordon Smyth ♦ 36k
0
votes
2
answers
331
views
2
answers
... Hi,
When subsetting an EList object as output by voomWithQualityWeights() there is a list element $sample.weights.
When subsetting using the single bracket method, this element returns the initial vector, instead of one that matches the subset.
This doesn't seem to be the correct behaviour.
Is thi ...
written 14 months ago by
Steve Pederson • 140
• updated
14 months ago by
Gordon Smyth ♦ 36k
0
votes
0
answers
300
views
0
answers
... Hi,
I'm wanting to plot some alignments from Barley (Hordeum vulgare) which has 6 chromosomes beyond the limit of .bai index files (2^29). Are there any plans to enable .csi index files or is this a difficult ask? Currently the only real option is splitting chromosomes pre-alignment.
Thanks,
Stev ...
written 2.1 years ago by
Steve Pederson • 140
0
votes
0
answers
566
views
0
answers
... http://careers.adelaide.edu.au/cw/en/job/494034/bioinformatics-researcher
Bioinformatics Specialist
Research, Training and Research Support
Fixed Term Position Available Immediately
The School of Animal and Veterinary Sciences is one of four schools in the Faculty of Sciences. Located at the ...
written 3.3 years ago by
Steve Pederson • 140
0
votes
0
answers
541
views
0
answers
... http://careers.adelaide.edu.au/cw/en/job/494038/senior-bioinformatics-researcher
The School of Animal and Veterinary Sciences is one of four schools in the Faculty of Sciences. Located at the University's Roseworthy campus, approximately 50 km north of Adelaide, it is South Australia's only veterin ...
written 3.3 years ago by
Steve Pederson • 140
0
votes
1
answer
984
views
1
answer
... We are seeking a motivated and experienced bioinformatician as part of the expansion of the University of Adelaide Bioinformatics Hub. The mission of the Bioinformatics Hub is to provide support and training in state of the art bioinformatics to graduate students, researchers and academics at the U ...
written 3.7 years ago by
Steve Pederson • 140
• updated
3.5 years ago by
Makis Motakis • 20
3
votes
1
answer
2.7k
views
1
answers
Answer:
A: Cannot load or update GO.db
... After a bit of playing around it's now installed & loading. Running biocValid(fix=TRUE) sorted it out.
...
written 3.8 years ago by
Steve Pederson • 140
4
votes
1
answer
2.7k
views
1
answer
... Hi,
I cannot load or update the package GO.db & can't quite figure a way out of it. I've tried as superuser & a regular user & the installation fails on both attempts.
Below is the output after running "R --vanilla" as superuser
Thanks,
Steve
> source("http://bioconductor.org/bio ...
written 3.8 years ago by
Steve Pederson • 140
0
votes
0
answers
410
views
0
answers
... Hi,
I'm building an array analysis package using an MCMC process for each
gene &
am writing the key values (posterior quantiles, mean, sd etc) for each
gene
to disk using CEL files and the aroma.affymetrix architecture. However
I've
noticed that on rare occasion, the incorrect values are writ ...
written 7.6 years ago by
Steve Pederson • 140
0
votes
0
answers
495
views
0
answers
... Hi,
I'm working on some alternative ideas for fitting exon arrays & was
wondering if there is a way to calculate theoretical probe affinities
directly from sequence data such as:
> myseq<-paste(sample(rep(c("A","C","T","G"),10),25),collapse="")
> myseq
[1] "ACTCACTTCGCTAAAACATTGGCTA ...
written 9.4 years ago by
Steve Pederson • 140
Latest awards to Steve Pederson
Appreciated
14 months ago,
created a post with more than 5 votes.
For BioCAsia, 29-30th November 2018, Melbourne, Australia
Popular Question
3.3 years ago,
created a question with more than 1,000 views.
For Cannot load or update GO.db
Teacher
3.6 years ago,
created an answer with at least 3 up-votes.
For A: Cannot load or update GO.db
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