User: Steve Pederson

gravatar for Steve Pederson
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140
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Location:
Australia
Website:
https://www.adelaide.e...
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5 days, 20 hours ago
Joined:
10 years ago
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Posts by Steve Pederson

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Troubles with barcodeRanks()
... Thanks Aaron. Everything worked running `colSums(counts(sce))` so we retested the original code & today it worked! Which is weird, because we'd already turned it off & on again yesterday. If I had to make an uninformed prediction, it was all running on a mounted drive so maybe there was a ...
written 20 days ago by Steve Pederson140
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Troubles with barcodeRanks()
... Hi, I'm just dipping my toes in the water with my first scRNA dataset & am working through the examples at the simpleSingleCell workflow for droplet-based protocols. We've loaded directly from the hdf5 object instead of the `*tsv.gz` files but can't seem to get the `barcodeRanks()` function to w ...
delayedarray simplesinglecell dropletutils singlecellexperiement written 21 days ago by Steve Pederson140 • updated 20 days ago by Aaron Lun24k
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News: BioCAsia, 29-30th November 2018, Melbourne, Australia
... The fourth Bioconductor Asia meeting (https://www.abacbs.org/biocasia2018/) will be held on Friday 30th November 2018 in Melbourne, Australia as a satellite event to ABACBS 2018 (https://www.abacbs.org/conference2018/about/). Speakers for the event include Prof Martin Morgan and A/Prof Stephanie Hic ...
news training conference written 9 months ago by Steve Pederson140 • updated 6 months ago by Gordon Smyth37k
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Subsetting an EList Object doesn't subset $sample.weights
... Hi, When subsetting an EList object as output by voomWithQualityWeights() there is a list element $sample.weights. When subsetting using the single bracket method, this element returns the initial vector, instead of one that matches the subset. This doesn't seem to be the correct behaviour. Is thi ...
limma voom elist written 18 months ago by Steve Pederson140 • updated 18 months ago by Gordon Smyth37k
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Gviz for long (plant) chromosomes using CSI index files
... Hi, I'm wanting to plot some alignments from Barley (Hordeum vulgare) which has 6 chromosomes beyond the limit of .bai index files (2^29). Are there any plans to enable .csi index files or is this a difficult ask? Currently the only real option is splitting chromosomes pre-alignment. Thanks, Stev ...
gviz written 2.5 years ago by Steve Pederson140
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Job: Bioinformatics Researcher - University of Adelaide, South Australia
... http://careers.adelaide.edu.au/cw/en/job/494034/bioinformatics-researcher Bioinformatics Specialist Research, Training and Research Support Fixed Term Position Available Immediately The School of Animal and Veterinary Sciences is one of four schools in the Faculty of Sciences. Located at the ...
job bioinformatician job australia written 3.6 years ago by Steve Pederson140
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Job: Senior Bioinformatics Researcher - University of Adelaide, South Australia
... http://careers.adelaide.edu.au/cw/en/job/494038/senior-bioinformatics-researcher The School of Animal and Veterinary Sciences is one of four schools in the Faculty of Sciences. Located at the University's Roseworthy campus, approximately 50 km north of Adelaide, it is South Australia's only veterin ...
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Job: Bioinformatics Research Associate, University of Adelaide
... We are seeking a motivated and experienced bioinformatician as part of the expansion of the University of Adelaide Bioinformatics Hub.  The mission of the Bioinformatics Hub is to provide support and training in state of the art bioinformatics to graduate students, researchers and academics at the U ...
job bioinformatics bioinformatician job australia written 4.0 years ago by Steve Pederson140 • updated 3.8 years ago by Makis Motakis20
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Answer: A: Cannot load or update GO.db
... After a bit of playing around it's now installed & loading. Running biocValid(fix=TRUE) sorted it out. ...
written 4.1 years ago by Steve Pederson140
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Cannot load or update GO.db
... Hi, I cannot load or update the package GO.db & can't quite figure a way out of it. I've tried as superuser & a regular user & the installation fails on both attempts. Below is the output after running "R --vanilla" as superuser Thanks, Steve > source("http://bioconductor.org/bio ...
bioclite go.db written 4.1 years ago by Steve Pederson140

Latest awards to Steve Pederson

Appreciated 18 months ago, created a post with more than 5 votes. For BioCAsia, 29-30th November 2018, Melbourne, Australia
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Cannot load or update GO.db
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: Cannot load or update GO.db

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