User: Jean-Pierre Desvignes

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60
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New User
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Last seen:
9 years, 2 months ago
Joined:
9 years, 11 months ago
Email:
j********************@igf.cnrs.fr

Posts by Jean-Pierre Desvignes

<prev • 5 results • page 1 of 1 • next >
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gene2pathway: Error in pathIDsLev1
... Dick Beyer u.washington.edu> writes: > > Hi, > > I get the "Error in pathIDsLev1" error when using the gene2pathway retrain() function. > > > retrain(minnmap=30, level1Only="Metabolism", level2Only="Genetic Information Processing", > organism="hsa", gene2Domains=NULL, KE ...
written 9.2 years ago by Jean-Pierre Desvignes60
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Comment: C: TopGO: How to retrieve the gene list related to a GO ID ?
... Hi Ricardo, I have not thought of that. it's simple. Thank you very much ! Jean-Pierre Ricardo a ?crit : > Hi Jean-Pierre, > > I assume you were using TopGO from the message header, > so you can do the following: > > # sample are your candidate genes and allgenes all other gene ...
written 9.7 years ago by Jean-Pierre Desvignes60
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TopGO: How to retrieve the gene list related to a GO ID ?
... Hello, I would known if it was possible to retrieve the genes related to a GO term ? If yes, how to do that ? GO.ID Term Level Annotated "Significant" Expected classicFisher GO:0051427 hormone receptor binding 5 16 17 "2" 0.12 0.00583 For example, what are the 2 Significant genes h ...
written 9.7 years ago by Jean-Pierre Desvignes60 • updated 9.7 years ago by Ricardo40
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plotProfiles (goProfiles) and bitmap
... Hello, I'm using the package goProfiles, but I have a little problem. When I want to save the plotProfiles to a png file (or others), 2 legends appear (the names of the GO term and the associed number), whereas if I directly see it, the graph appears correctly. the script: bitmap(type = "png16m", ...
go graph goprofiles written 9.9 years ago by Jean-Pierre Desvignes60
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Answer: A: question about ontoCompare() performance change
... Hello, I have the same problem as Scott. When I compared 2 lists of go term (1000 values for the first list and 4000 for the second list) with the version 1.10 of gotools, the time to make the process was ~10min. Now I must wait several hours to compare the same list. I often stop the process befor ...
written 9.9 years ago by Jean-Pierre Desvignes60

Latest awards to Jean-Pierre Desvignes

Great Question 9.2 years ago, created a question with more than 5,000 views. For TopGO: How to retrieve the gene list related to a GO ID ?
Popular Question 9.2 years ago, created a question with more than 1,000 views. For TopGO: How to retrieve the gene list related to a GO ID ?

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