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Answer: A: Circular dependencies between data and software packages: how best to avoid
5.6 years ago Tim Triche ★ 4.2k
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Answer: A: non-integer counts for edgeR
updated 9.0 years ago by 50k • written 12.0 years ago by ★ 4.2k
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Answer: A: "My tags" -- how to actually watch/follow a tag
9.4 years ago Tim Triche ★ 4.2k
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2.3k
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Answer: A: IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
updated 9.6 years ago by 65k • written 9.6 years ago by ★ 4.2k
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Answer: A: IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
9.6 years ago Tim Triche ★ 4.2k
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Answer: A: Interspecies differential expression of orthologs with Edger
9.7 years ago Tim Triche ★ 4.2k
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732
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Answer: A: Shearwater question
9.7 years ago Tim Triche ★ 4.2k
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659
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Answer: A: Calculate the x when f(x) reaches its minimum
9.8 years ago Tim Triche ★ 4.2k
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3.7k
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Answer: A: GRanges apply functions
9.9 years ago Tim Triche ★ 4.2k
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3.7k
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Answer: A: GRanges apply functions
9.9 years ago Tim Triche ★ 4.2k
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Answer: A: Displaying very deep coverage in Gviz
10.0 years ago Tim Triche ★ 4.2k
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1.4k
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Answer: A: Fwd: adjusted P-values
10.0 years ago Tim Triche ★ 4.2k
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1
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3.5k
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Answer: A: doParallel with Bumphunter gives Error in mcfork()
10.1 years ago Tim Triche ★ 4.2k
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2
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2.0k
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Answer: A: Coercion lumi/minfi objects
10.2 years ago Tim Triche ★ 4.2k
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4.5k
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Answer: A: WGCNA
10.2 years ago Tim Triche ★ 4.2k
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4.5k
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Answer: A: WGCNA
10.2 years ago Tim Triche ★ 4.2k
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Answer: A: getGEO and further analyzing of data by bioconductor
10.2 years ago Tim Triche ★ 4.2k
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2.0k
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Answer: A: Coercion lumi/minfi objects
10.2 years ago Tim Triche ★ 4.2k
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1
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1.1k
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Answer: A: Can we use Intraclass correlation (ICC) to optimize clustering parameters?
10.2 years ago Tim Triche ★ 4.2k
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1
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945
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Answer: A: cluster or pattern analysis of expression and CN data of cell lines
10.3 years ago Tim Triche ★ 4.2k
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1.9k
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Answer: A: minfi release 1.8
10.3 years ago Tim Triche ★ 4.2k
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1.9k
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Answer: A: bsmooth and bsseq for RRBS
10.3 years ago Tim Triche ★ 4.2k
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Answer: A: RRBS question
10.3 years ago Tim Triche ★ 4.2k
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965
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Answer: A: BSmooth install question
10.4 years ago Tim Triche ★ 4.2k
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986
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Answer: A: Cross map two different probe set IDs
10.5 years ago Tim Triche ★ 4.2k
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2.4k
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Answer: A: GRanges Overlaps
10.5 years ago Tim Triche ★ 4.2k
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2.2k
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Answer: A: MethyLumiM to MethyLumiSet?
10.5 years ago Tim Triche ★ 4.2k
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1.0k
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Answer: A: What packages needed for anti-correlated clustering?
10.5 years ago Tim Triche ★ 4.2k
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1.0k
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Answer: A: What packages needed for anti-correlated clustering?
10.5 years ago Tim Triche ★ 4.2k
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2
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2.2k
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Answer: A: MethyLumiM to MethyLumiSet?
10.5 years ago Tim Triche ★ 4.2k
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1.7k
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Answer: A: mifi unable to install by bioLite
10.6 years ago Tim Triche ★ 4.2k
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1.3k
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Answer: A: minfi: control probes sequence
10.7 years ago Tim Triche ★ 4.2k
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2.1k
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Answer: A: Control probe QC plots for Infinium 450k chips (lumi, minfi...)
10.7 years ago Tim Triche ★ 4.2k
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Answer: A: *Ranges paper published
10.8 years ago Tim Triche ★ 4.2k
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2.1k
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Answer: A: GSE states
10.8 years ago Tim Triche ★ 4.2k
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2.1k
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Answer: A: GSE states
10.8 years ago Tim Triche ★ 4.2k
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1.1k
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Answer: A: bsseq in devel
10.8 years ago Tim Triche ★ 4.2k
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1
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1.4k
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Answer: A: Excluding probes during methylation analysis
10.9 years ago Tim Triche ★ 4.2k
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1
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3.2k
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Answer: A: Use which method to calculate q-value or adjusted p-value
10.9 years ago Tim Triche ★ 4.2k
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2
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2.4k
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Answer: A: IlluminaHumanMethylation450k.db: Missing probes in IlluminaHumanMethylation450kP
10.9 years ago Tim Triche ★ 4.2k
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0
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1.8k
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Answer: A: Cell-type enrichment for gene expression
10.9 years ago Tim Triche ★ 4.2k
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1.6k
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Answer: A: preprocess core for quantile normalization
10.9 years ago Tim Triche ★ 4.2k
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2.1k
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Answer: A: Nearest Template Prediction?
11.0 years ago Tim Triche ★ 4.2k
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927
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Answer: A: advantages of annotation packages
11.0 years ago Tim Triche ★ 4.2k
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1.7k
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Answer: A: Fwd: feature weights in 'superpc' package
11.0 years ago Tim Triche ★ 4.2k
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2.7k
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Answer: A: MethyLumiSet object
11.1 years ago Tim Triche ★ 4.2k
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1
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1.7k
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Answer: A: Fwd: GO terms: Annotation for HumanMethylation450
11.1 years ago Tim Triche ★ 4.2k
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1
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2.1k
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Answer: A: GO terms: Annotation for HumanMethylation450
11.1 years ago Tim Triche ★ 4.2k
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0
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877
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Answer: A: (minfi) Return value from dmpFinder
11.1 years ago Tim Triche ★ 4.2k
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1.8k
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Answer: A: IlluminaHumanMethylation450kprobe for nearest TSS calculation question
11.2 years ago Tim Triche ★ 4.2k
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