User: jiayu wen

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jiayu wen60
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7 years, 5 months ago
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9 years, 9 months ago
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Posts by jiayu wen

<prev • 6 results • page 1 of 1 • next >
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seqSegment readGeneric() function error
... Dear list, I have been trying to use seqmentSeq package. Running the examples in the package was successful, but on my data gives error at "readGeneric" function: here is my test code and attached data files (was attached, but held for review because it is bigger than 40 KB). libfiles <- c("V01 ...
written 7.4 years ago by jiayu wen60 • updated 7.4 years ago by Martin Morgan ♦♦ 23k
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topGO:what is the good way to work out FDR?
... Dear list, I am using topGO (elim) method to calculate over-represented GO terms and I want to do FDR estimate on output P-values, what is good way to do that? thanks, Jean ...
go topgo written 9.0 years ago by jiayu wen60
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Comment: C: BioC packages for Human Gene 1.0 ST arrays
... Hi Philip, Thanks for your quick reply! I will try that then. Regards, Jean On Apr 7, 2010, at 12:12 PM, Groot, Philip de wrote: > Hello Jean, > > You can use the same packages if you use hugene10stv1.r3cdf > . > Loading the .CEL-files is done as follows: > > x <- ReadAff ...
written 9.0 years ago by jiayu wen60
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BioC packages for Human Gene 1.0 ST arrays
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written 9.1 years ago by jiayu wen60 • updated 9.0 years ago by Groot, Philip de630
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Comment: C: BioMart and Ensembl questions
... Hi Paul and others, Thanks for responding my questions. I will try these suggestions. Jean On Sep 22, 2009, at 2:41 AM, Paul Leo wrote: > > Just so this thread has a tidy conclusion: > > with the development and production version to get to NCBI36 use as > follows: > > Choos ...
written 9.6 years ago by jiayu wen60
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Comment: C: Analysis HumanHT-12 Illumina
... Dear all, I am using topGO (elim) to find overrepresented GO terms (below is 3 example output terms). I am confused with the output "significant" and "expected". So if "significant" < "expected" (in the case of " cellular process" and "cellular metabolic proces") , does it mean the GO terms are ...
written 9.8 years ago by jiayu wen60

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