User: Manca Marco PATH

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Posts by Manca Marco PATH

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Comment: C: Memory and vector size management on linux 64bit
... Dear Benilton, thank you for the prompt reply. I suspect you are right. R had just been installed from the Canonical repository on this machine and it was a 32bit edition. Thank you for your suggestion and for pointing out the 64bit repositories. Just for the sake of completeness at this point, ...
written 9.4 years ago by Manca Marco PATH200
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Memory and vector size management on linux 64bit
... Dear fellow bioconductors, good afternoon. I am encountering an error concerning the allocations of vectors bigger than a certain size. My problem is that said size is far below the amount of RAM I have installed on the system. Following some previous threads on the topic I have at first thought ...
microarray lumi written 9.4 years ago by Manca Marco PATH200 • updated 9.4 years ago by Benilton Carvalho4.3k
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Answer: A: error in gene2pathway results
... Dear Alberto the answer is below your email. >________________________________________ >Da: bioconductor-bounces at stat.math.ethz.ch [bioconductor-bounces at stat.math.ethz.ch] per conto di Alberto Goldoni [alberto.goldoni1975 at gmail.com] >Inviato: luned? 29 marzo 2010 17.53 >A: B ...
written 9.5 years ago by Manca Marco PATH200
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Answer: A: info for cuda on R
... Dear Alberto, see below your email according to the mailing list rules ________________________________________ Da: bioconductor-bounces at stat.math.ethz.ch [bioconductor-bounces at stat.math.ethz.ch] per conto di Alberto Goldoni [alberto.goldoni1975 at gmail.com] Inviato: luned? 22 febbraio 20 ...
written 9.6 years ago by Manca Marco PATH200
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Answer: A: cellHTS2 readPlateList
... Dear Jose are you sure your platelist.txt file (and all the other relevant files as well) is in your working directory? I assume you are using R for windows (I guess by the path you are getting in the error message) thus you may easily check that by going into "File" -> "Change dir..." and whe ...
written 10.1 years ago by Manca Marco PATH200
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Comment: C: Is it possible to analyze GOs for lists of genes obtained from a "top-down" appr
... Dear Amit, thank you for your valuable suggestion. I have been using DAVID and Panther for those analyses up to now, but I feel more comfortable using R and Bioconductor and I am sincerely glad something exist which could help me doing what I wanted. I am downloading and trying it now. Best rega ...
written 10.1 years ago by Manca Marco PATH200
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Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?
... Dear Bioconductors, good morning. I hope my email finds you well. I would like to ask for your help concerning a task that I suppose being quite trivial but through which I am unable to find my way. Is it possible to get GOIDs for lists of genes obtained from (as instance) webservices or publish ...
microarray annotate written 10.1 years ago by Manca Marco PATH200 • updated 10.1 years ago by rgentleman5.5k
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Question about filtering genes when using siggenes
... Dear Holger, good afternoon. I was wondering whether there is a parameter that I can add directly to my siggenes command string to exclude or include a specific set of genes from my ExpressionSet from/into my analysis (as instance according to the expression level or the Gene Ontology, assuming I ...
annotation genefilter siggenes written 10.1 years ago by Manca Marco PATH200
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Answer: A: Rafael Irizarry wins prestigious award
... Congratulation for your achievements, Rafael, and thank you for working so hard for everyone of us in the Bioconductor Community. My best regards, Marco -- Marco Manca, MD University of Maastricht Faculty of Health, Medicine and Life Sciences (FHML) Cardiovascular Research Institute (CARIM) PO Bo ...
written 10.1 years ago by Manca Marco PATH200
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Answer: A: GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe
... Hi Benoit, I am not an expert (by any means) here, but having a glance at the files you are attaching I notice that they are Genebank identifiers (and not Entrez) and that they are still with the NM_*****.* format, where .* is the version of the record. Now I have read somewhere (it could even be ...
written 10.1 years ago by Manca Marco PATH200

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