User: Peng Yu

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Peng Yu940
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Posts by Peng Yu

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How updated is hom.Hs.inp.db? (to get homologous mapping between mouse and human symbol)?
... Hi, I'm wondering to how updated hom.Hs.inp.db is. "Title: Homology information for Homo Sapiens from Inparanoid" According to the title of the package, the data is from Inparanoid. However, when I check http://inparanoid.sbc.su.se/cgi-bin/index.cgi, it says "Version 7.0, Updated June 200 ...
go homo sapiens written 6.7 years ago by Peng Yu940 • updated 6.7 years ago by Marc Carlson7.2k
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Answer: A: Why org.At.tair.db is named differently?
... OK. I see that eg means Entrez Gene, and sgd means SGD, etc. On Tue, Jul 24, 2012 at 10:46 AM, Peng Yu wrote: > Hi, > > http://www.bioconductor.org/packages/release/data/annotation/ > > Almost Genome wide annotation packages following the name convention > org.species.eg.db. I'm ...
written 6.7 years ago by Peng Yu940
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Why org.At.tair.db is named differently?
... Hi, http://www.bioconductor.org/packages/release/data/annotation/ Almost Genome wide annotation packages following the name convention org.species.eg.db. I'm wondering why org.At.tair.db is named differently. Should its name be modified to following the same convention? -- Regards, Peng ...
annotation written 6.7 years ago by Peng Yu940
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Comment: C: Library not loaded: /usr/local/lib/libgvc.5.dylib (Rgraphviz)
... >> ~$ ll -go /usr/local/lib/libgvc.6.dylib >> -rwxrwxr-x 1 988980 2012-05-21 00:21:09 /usr/local/lib/libgvc.6.dylib Obviously, I have graphviz installed. Otherwise, I would not have the above file. The problem is that my installation is newer (see version below). ~$ dot -v dot - graphv ...
written 6.7 years ago by Peng Yu940
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Library not loaded: /usr/local/lib/libgvc.5.dylib (Rgraphviz)
... Hi, I have the following error. I only can find the following file. But I can't find libgvc.5.dylib on my system. Does anybody know what is wrong? ~$ ll -go /usr/local/lib/libgvc.6.dylib -rwxrwxr-x 1 988980 2012-05-21 00:21:09 /usr/local/lib/libgvc.6.dylib > library(Rgraphviz) Error : .onLoad ...
rgraphviz written 6.7 years ago by Peng Yu940 • updated 6.7 years ago by Dan Tenenbaum8.2k
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Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
... Hi, I get a warning when I try to install a bioc package. http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2 .15 is not accessible. But I don't understand why it is accessed. Does anybody know how to fix this problem? source("http://bioconductor.org/biocLite.R") biocLit ...
biocinstaller written 6.7 years ago by Peng Yu940 • updated 6.7 years ago by Dan Tenenbaum8.2k
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Comment: C: How to compute the stabilized variance in DESeq?
... On Tue, Apr 10, 2012 at 3:50 AM, Simon Anders wrote: > Dear Peng > > > On 04/09/2012 11:46 PM, Peng Yu wrote: >> >> Hi Simon, >> >> I see the resVarA& ?resVarB columns, which is the ratio between the >> >> stabilized variance and the actual varian ...
written 7.0 years ago by Peng Yu940
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How to compute the stabilized variance in DESeq?
... Hi Simon, I see the resVarA & resVarB columns, which is the ratio between the stabilized variance and the actual variance. To get the stabilized variance, is the following R code correct? var(values_A)*resVarA -- Regards, Peng ...
written 7.0 years ago by Peng Yu940 • updated 7.0 years ago by Simon Anders3.5k
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Comment: C: Anything wrong with http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard
... On Wed, Jan 18, 2012 at 10:41 AM, Steve Lianoglou wrote: > Hi Peng, > > Not the optimal solution, but maybe you can download the (source) > packages for the chip you want? > > It looks like "Version 14" are the packages appropriate for R 2.13: > > http://brainarray.mbni.med. ...
written 7.2 years ago by Peng Yu940
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Answer: A: Anything wrong with http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard
... On Wed, Jan 18, 2012 at 10:28 AM, Peng Yu wrote: > Hi, > > R version 2.13.0 (2011-04-13) > Copyright (C) 2011 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > I have the above version of R installed on m ...
written 7.2 years ago by Peng Yu940

Latest awards to Peng Yu

Popular Question 6.7 years ago, created a question with more than 1,000 views. For [R] How to show both the commands and the output on the screen?
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Popular Question 6.7 years ago, created a question with more than 1,000 views. For Library not loaded: /usr/local/lib/libgvc.5.dylib (Rgraphviz)
Popular Question 6.7 years ago, created a question with more than 1,000 views. For [Genome] "Error Unrecognized format line 1..." when using "Add Custom Tracks"

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