User: lohith madireddy

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Posts by lohith madireddy

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Comment: C: ArrayQualityMetrics: Problem with labels in plots. A bug??
... Hi Audrey, thanks for the addition of the "spatial" argument. Yes, it is the only function that requires a lot of memory. Other functions are very quick once we get the aqm.prepdata object. I agree with you that it is not necessary to make arguments for other plots and will most definitely confuse ...
written 10.0 years ago by lohith madireddy40
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ArrayQualityMetrics: Problem with labels in plots. A bug??
... Dear Audrey, the labeling works good now. Thanks for the new version.. There are certainly memory issues performing spatial plots. I just have 69 arrays with around 9000 features on each array. I can imagine its impossible to perform these plots for large number of arrays of larger sizes.The softwa ...
affyplm arrayqualitymetrics written 10.0 years ago by lohith madireddy40 • updated 10.0 years ago by audrey280
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Answer: A: maSigPro error in getting a design matrix
... Never mind... I got it. The design matrix was wrongly specified. The array names should be the row names not as a separate column. I made the changes necessary and it works now. Lohith On Fri, Oct 30, 2009 at 2:15 PM, lohith madireddy wrote: > Dear Bioconductors, > > I have the followi ...
written 10.0 years ago by lohith madireddy40
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maSigPro error in getting a design matrix
... Dear Bioconductors, I have the following design for my experiment. I am trying to use maSigPro to assess temporal differential expression across 3 experimental groups I want to consider (control, vehicle and Var). The design matrix is as shown below in the maSigPro format. design ???????????????? ...
masigpro a4 written 10.0 years ago by lohith madireddy40

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