User: Jenny Drnevich

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Jenny Drnevich2.2k
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Posts by Jenny Drnevich

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Comment: C: problems loading the Rgraphviz package
... Thanks Martin (and Kasper, and ...), >Version numbers are confusing but 2.2 < 2.16 (i.e. version 2.16 is >more recent than 2.2) because 2 < 16. This was just recently pointed out on the list, but my brain did not incorporate it! My biological/statistical training see it mathematically: ...
written 9.5 years ago by Jenny Drnevich2.2k
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Comment: C: problems loading the Rgraphviz package
... Hi Martin, I just ran into this problem myself, and I'm a little confused as to your response. I was looking at all the documentation/vignettes for Rgraphviz, and it's not very clear or explicit either. First of all, there is very little mention of needing graphviz in Rgraphviz; In Details it does ...
written 9.5 years ago by Jenny Drnevich2.2k
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bug in gcrma help CHM files?
... Hi, I'm having problems calling the help files for functions from the gcrma package. I haven't had this problem with getting help files from other packages (which I've done a LOT over the past week). Is it a bug? Thanks, Jenny > ?justGCRMA Error in print.help_files_with_topic("C:/PROGRA~1/R/R ...
go written 9.5 years ago by Jenny Drnevich2.2k • updated 9.5 years ago by Patrick Aboyoun1.6k
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biocLite() failed to get CRAN package...
... Hi everyone, I just upgraded to R 2.7.0 and used biocLite() to install many Bioconductor packages. The base install of biocLite() worked fine, but when I used it to install some other packages, at the end I got a warning message that "dependency 'XML' is not available" (screen output and sessionInf ...
written 9.6 years ago by Jenny Drnevich2.2k • updated 9.6 years ago by Patrick Aboyoun1.6k
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Answer: A: CDF Package installation
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20080417/ 849594cc/attachment.pl ...
written 9.6 years ago by Jenny Drnevich2.2k
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CDF Package installation
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20080417/ b291c1ec/attachment.pl ...
written 9.6 years ago by Jenny Drnevich2.2k
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Answer: A: Help needed on limma and differentially expressed genes
... Hi Stanley, In general, posting the same question 3 times to the list is LESS likely to get it answered; however, your 3rd posting was finally clear enough to understand. The design matrix you want to use is for a common reference design (7.3 in limma vignette), which will give you one column for e ...
written 9.6 years ago by Jenny Drnevich2.2k
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Answer: A: beadarray_1.7.6. problem/error with readBeadSummaryData()
... Hi Christian, I've been working with Illumina data myself and also came across this error. The problem is that you're leaving the default value for ProbeID to "TargetID" (see ?readBeadSummaryData for a description of the arguments and their defaults), but you don't have a TargetID column in your da ...
written 9.7 years ago by Jenny Drnevich2.2k
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probe and probeset removal script
... Hi Philip, Glad to hear the script was useful to you! I'm not sure of the best way to reference a script you got from the BioC archives. It was originally written by Ariel Chernomoretz, I only modified it slightly, so it rightly should be cited to him. I've never used it in a publication, but maybe ...
microarray process written 9.7 years ago by Jenny Drnevich2.2k
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Answer: A: How to remove some probes from one probeset in the begining?
... See http://article.gmane.org/gmane.science.biology.informatics.conduct or/9869/ Jenny At 10:42 PM 3/2/2008, pkuonline wrote: >Dear All, > >Taking HG-U133_PLUS_2 as an example, one probeset consists of 11 >individual probes. I'd like to exclude few non-specific probes from >one prob ...
written 9.7 years ago by Jenny Drnevich2.2k

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Centurion 9.5 years ago, created 100 posts.

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