User: Khademul Islam

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30
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New User
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Last seen:
2 years, 4 months ago
Joined:
9 years, 8 months ago
Email:
k*************@gmail.com

Posts by Khademul Islam

<prev • 4 results • page 1 of 1 • next >
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ChIPpeakAnno, MACS format annotation
... Hi, I just have installed latest ChIPpeakAnno and tried example code and data. But got error. Same error with my data as well. How to solve this? # Just another question: when it annotate to nearest TSS, does it use Summit or Start position from MACS file? https://bioconductor.org/packages/devel ...
chippeakanno bioconductor written 2.4 years ago by Khademul Islam30 • updated 7 months ago by Julie Zhu4.0k
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Comment: C: ChIPpeakAnno - VennDiagram P-value - NaN
... Hi Julie, *"ChIPpeakAnno"* -- overlapping bed files and significant test: --- I have run my files with stable release version 1.4.2 for overlapping features and now it is amazingly fast !! Thanks. However, I have found that if I am only interested overlaping function (* findOverlappingPeaks*) ...
written 8.9 years ago by Khademul Islam30
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ChIPpeakAnno Biomart Archive annotation querying
... Hi, This way it works perfectly !!! many thanks again Khademul ===================================================== On Mon, Nov 30, 2009 at 3:56 PM, Julie Zhu wrote: > Hi Khademul, > > I think querying bioMart archive data failed, could you please try to get > annotation using t ...
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ChIPpeakAnno Biomart annotation
... Hi, The ChIPpeakAnno is working fine with R 2.10.0 with annotation from TSS.NCBI36..............like following: library(ChIPpeakAnno) myPeak=RangedData(IRanges(start=start,end=end,names=names),space=space ) data(TSS.human.NCBI36) annotatedPeak = annotatePeakInBatch(myPeak, AnnotationData=TSS.human ...
annotation go annotationdata bsgenome biomart chippeakanno written 9.7 years ago by Khademul Islam30 • updated 9.7 years ago by Julie Zhu4.0k

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