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Answer:
A: DEXSeq : can we plot from the table of results or/and run DEXSeq from a matrix o
3.8 years ago
Simon Anders
★ 3.7k
2
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1
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857
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Answer:
A: Mocking data for understanding interactions in DESeq2
4.1 years ago
Simon Anders
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0
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1.3k
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Answer:
A: Wrong results of DESeq compared to DESeq2 for some test cases?
4.1 years ago
Simon Anders
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0
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1.1k
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Answer:
C: how to analyze and find differentially expressed genes based on miRNA gene raw
4.2 years ago
Simon Anders
★ 3.7k
4
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1
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4.5k
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Answer:
A: TMM Normalization: DESeqDataSet: some values in assay are negative
4.8 years ago
Simon Anders
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0
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1
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897
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Answer:
A: DEXSeq error in dexseq_count.py. ValueError: need more than 4 values to unpack
4.8 years ago
Simon Anders
★ 3.7k
4
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0
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14k
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Answer:
A: latest version of R is 3.5.1 and it does not compatible with many Bioconductor p
5.7 years ago
Simon Anders
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0
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1.3k
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Answer:
A: RNA-seq data analysis with two species using DESeq2
5.7 years ago
Simon Anders
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1
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602
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Answer:
A: should I get the logarithm of count values when I use standard method
5.9 years ago
Simon Anders
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1
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1.3k
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Answer:
A: ASE using DESeq2
5.9 years ago
Simon Anders
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2
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4.7k
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Answer:
A: Comparing between two differential expression analysis - two different fold chan
6.2 years ago
Simon Anders
★ 3.7k
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1
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1.8k
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Answer:
A: Matrix not full rank - DESeq2
6.3 years ago
Simon Anders
★ 3.7k
1
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1
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2.8k
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Answer:
A: Error: C stack usage when installing Txdb package
6.4 years ago
Simon Anders
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21k
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Answer:
A: Determining gene expression levels with DESeq2 in a design with no condition
6.4 years ago
Simon Anders
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4
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0
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5.8k
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Answer:
A: P values from Deseq Analysis
7.0 years ago
Simon Anders
★ 3.7k
4
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1
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2.1k
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Answer:
A: DESeq2: interaction term as in limma
7.0 years ago
Simon Anders
★ 3.7k
1
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1
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6.2k
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Answer:
A: DESEq2 error when performing exploratory analysis with no replicates
7.4 years ago
Simon Anders
★ 3.7k
2
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1
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2.9k
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Answer:
A: Design: DESeq2 and continuous variables
7.4 years ago
Simon Anders
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2
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0
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1.2k
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Answer:
A: DESEQ2 : When we merge technical replicates raw reads, do we need to divide by t
7.5 years ago
Simon Anders
★ 3.7k
17
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3
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14k
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Answer:
A: Usability of ERCC spike-ins in standard RNAseq experiments
7.5 years ago
Simon Anders
★ 3.7k
0
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2
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4.1k
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Answer:
A: DESEQ2 linear model of dose
7.5 years ago
Simon Anders
★ 3.7k
0
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0
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680
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Answer:
A: about sets of replicates in RNA-seq and quality controls
7.6 years ago
Simon Anders
★ 3.7k
3
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1
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2.0k
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Answer:
A: Deseq2 DE between WT and MUTANT normalised with respect to control
7.6 years ago
Simon Anders
★ 3.7k
1
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1
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1.3k
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Answer:
A: question regarding custom normalizationFactors in DESeq2
7.6 years ago
Simon Anders
★ 3.7k
1
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1
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3.6k
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Answer:
A: How to properly normalize a single-cell sparse matrix?
7.6 years ago
Simon Anders
★ 3.7k
0
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0
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3.7k
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Answer:
A: DESeq: Error in model.matrix.formula(design(object), data = colData(object)) :
7.8 years ago
Simon Anders
★ 3.7k
4
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2
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26k
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Answer:
A: DESEq2 Paired samples Before and after treatment
7.8 years ago
Simon Anders
★ 3.7k
0
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0
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1.1k
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Answer:
A: DEXseq for alternate promoter usage
7.9 years ago
Simon Anders
★ 3.7k
3
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1
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5.5k
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Answer:
A: GSEA-like enrichment score calculation
7.9 years ago
Simon Anders
★ 3.7k
3
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0
replies
10k
views
Answer:
A: Error bars DESeq or DESeq2 fold change
8.0 years ago
Simon Anders
★ 3.7k
1
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1
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10k
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Answer:
A: Difference between DESeq and DESeq2
8.1 years ago
Simon Anders
★ 3.7k
4
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4
replies
7.8k
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Answer:
A: Normalization methodology in DESeq/DESeq2 vs edgeR
8.4 years ago
Simon Anders
★ 3.7k
0
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1
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1.4k
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Answer:
A: Question on DESeq2 on concatenated factors model vs. full interaction model
8.5 years ago
Simon Anders
★ 3.7k
1
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2
replies
4.3k
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Answer:
A: Can DESeq2 deal with zero-inflated data
8.5 years ago
Simon Anders
★ 3.7k
0
votes
1
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11k
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Answer:
A: Deseq2 rlog or 'regular' normalization?
8.6 years ago
Simon Anders
★ 3.7k
1
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0
replies
3.5k
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Answer:
A: about DEseq for spike-in datasets
8.7 years ago
Simon Anders
★ 3.7k
3
votes
1
reply
2.7k
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Answer:
A: DESeq2 with paired samples - problem with the design
8.8 years ago
Simon Anders
★ 3.7k
2
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1
reply
6.6k
views
Answer:
A: DESeq2 interaction term
8.8 years ago
Simon Anders
★ 3.7k
0
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0
replies
3.0k
views
Answer:
A: DESeq2 model with blocking factor + interaction term
8.8 years ago
Simon Anders
★ 3.7k
0
votes
1
reply
3.3k
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Answer:
A: Calculate DESeq2 fold change of 1 gene to 1 of the sample
9.0 years ago
Simon Anders
★ 3.7k
0
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0
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1.8k
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Answer:
A: DEXSeq with multiple conditions
updated 9.1 years ago by
Michael Love
41k • written 9.1 years ago by
Simon Anders
★ 3.7k
0
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0
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5.2k
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Answer:
A: Error in estimateDispersionsFit [DESeq2]
9.2 years ago
Simon Anders
★ 3.7k
1
vote
0
replies
1.4k
views
Answer:
A: Multi factor analysis in DEXSeq
9.2 years ago
Simon Anders
★ 3.7k
0
votes
1
reply
1.4k
views
Answer:
A: Implementation of SAM statistical technique in R
9.3 years ago
Simon Anders
★ 3.7k
0
votes
0
replies
852
views
Answer:
A: DeSEQ for transcriptomes of pathogens
9.3 years ago
Simon Anders
★ 3.7k
7
votes
1
reply
4.5k
views
Answer:
A: DEXSeq Usage and Expression Confusion
9.3 years ago
Simon Anders
★ 3.7k
0
votes
0
replies
1.2k
views
Answer:
A: question about DESeq: estimateDispersions
9.3 years ago
Simon Anders
★ 3.7k
1
vote
1
reply
5.2k
views
Answer:
A: Only one replicate: inferring dispersion from other group
9.4 years ago
Simon Anders
★ 3.7k
2
votes
0
replies
2.9k
views
Answer:
A: Reference for differential gene expression analysis
9.4 years ago
Simon Anders
★ 3.7k
2
votes
1
reply
3.1k
views
Answer:
A: Using Sailfish estimated read-counts for DESeq2 analysis
9.4 years ago
Simon Anders
★ 3.7k
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