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Answer: A: DEXSeq : can we plot from the table of results or/and run DEXSeq from a matrix o
3.8 years ago Simon Anders ★ 3.7k
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876
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Answer: A: Mocking data for understanding interactions in DESeq2
4.1 years ago Simon Anders ★ 3.7k
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1.3k
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Answer: A: Wrong results of DESeq compared to DESeq2 for some test cases?
4.2 years ago Simon Anders ★ 3.7k
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1.2k
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Answer: C: how to analyze and find differentially expressed genes based on miRNA gene raw
4.3 years ago Simon Anders ★ 3.7k
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4.5k
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Answer: A: TMM Normalization: DESeqDataSet: some values in assay are negative
4.8 years ago Simon Anders ★ 3.7k
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908
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Answer: A: DEXSeq error in dexseq_count.py. ValueError: need more than 4 values to unpack
4.9 years ago Simon Anders ★ 3.7k
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14k
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Answer: A: latest version of R is 3.5.1 and it does not compatible with many Bioconductor p
5.7 years ago Simon Anders ★ 3.7k
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Answer: A: RNA-seq data analysis with two species using DESeq2
5.8 years ago Simon Anders ★ 3.7k
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614
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Answer: A: should I get the logarithm of count values when I use standard method
6.0 years ago Simon Anders ★ 3.7k
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1.3k
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Answer: A: ASE using DESeq2
6.0 years ago Simon Anders ★ 3.7k
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2
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4.8k
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Answer: A: Comparing between two differential expression analysis - two different fold chan
6.3 years ago Simon Anders ★ 3.7k
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1.9k
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Answer: A: Matrix not full rank - DESeq2
6.3 years ago Simon Anders ★ 3.7k
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2.8k
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Answer: A: Error: C stack usage when installing Txdb package
6.4 years ago Simon Anders ★ 3.7k
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21k
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Answer: A: Determining gene expression levels with DESeq2 in a design with no condition
6.5 years ago Simon Anders ★ 3.7k
4
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5.9k
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Answer: A: P values from Deseq Analysis
7.0 years ago Simon Anders ★ 3.7k
4
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2.1k
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Answer: A: DESeq2: interaction term as in limma
7.1 years ago Simon Anders ★ 3.7k
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6.2k
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Answer: A: DESEq2 error when performing exploratory analysis with no replicates
7.5 years ago Simon Anders ★ 3.7k
2
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2.9k
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Answer: A: Design: DESeq2 and continuous variables
7.5 years ago Simon Anders ★ 3.7k
2
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1.2k
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Answer: A: DESEQ2 : When we merge technical replicates raw reads, do we need to divide by t
7.6 years ago Simon Anders ★ 3.7k
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Answer: A: Usability of ERCC spike-ins in standard RNAseq experiments
7.6 years ago Simon Anders ★ 3.7k
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4.2k
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Answer: A: DESEQ2 linear model of dose
7.6 years ago Simon Anders ★ 3.7k
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688
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Answer: A: about sets of replicates in RNA-seq and quality controls
7.6 years ago Simon Anders ★ 3.7k
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2.1k
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Answer: A: Deseq2 DE between WT and MUTANT normalised with respect to control
7.7 years ago Simon Anders ★ 3.7k
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1.3k
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Answer: A: question regarding custom normalizationFactors in DESeq2
7.7 years ago Simon Anders ★ 3.7k
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3.7k
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Answer: A: How to properly normalize a single-cell sparse matrix?
7.7 years ago Simon Anders ★ 3.7k
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3.8k
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Answer: A: DESeq: Error in model.matrix.formula(design(object), data = colData(object)) :
7.9 years ago Simon Anders ★ 3.7k
4
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27k
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Answer: A: DESEq2 Paired samples Before and after treatment
7.9 years ago Simon Anders ★ 3.7k
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1.1k
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Answer: A: DEXseq for alternate promoter usage
7.9 years ago Simon Anders ★ 3.7k
3
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5.6k
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Answer: A: GSEA-like enrichment score calculation
7.9 years ago Simon Anders ★ 3.7k
3
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10k
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Answer: A: Error bars DESeq or DESeq2 fold change
8.1 years ago Simon Anders ★ 3.7k
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10k
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Answer: A: Difference between DESeq and DESeq2
8.1 years ago Simon Anders ★ 3.7k
4
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4
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7.8k
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Answer: A: Normalization methodology in DESeq/DESeq2 vs edgeR
8.5 years ago Simon Anders ★ 3.7k
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1.4k
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Answer: A: Question on DESeq2 on concatenated factors model vs. full interaction model
8.5 years ago Simon Anders ★ 3.7k
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2
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4.3k
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Answer: A: Can DESeq2 deal with zero-inflated data
8.5 years ago Simon Anders ★ 3.7k
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11k
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Answer: A: Deseq2 rlog or 'regular' normalization?
8.6 years ago Simon Anders ★ 3.7k
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0
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3.5k
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Answer: A: about DEseq for spike-in datasets
8.7 years ago Simon Anders ★ 3.7k
3
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2.7k
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Answer: A: DESeq2 with paired samples - problem with the design
8.9 years ago Simon Anders ★ 3.7k
2
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1
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6.6k
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Answer: A: DESeq2 interaction term
8.9 years ago Simon Anders ★ 3.7k
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3.0k
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Answer: A: DESeq2 model with blocking factor + interaction term
8.9 years ago Simon Anders ★ 3.7k
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3.4k
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Answer: A: Calculate DESeq2 fold change of 1 gene to 1 of the sample
9.0 years ago Simon Anders ★ 3.7k
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0
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1.9k
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Answer: A: DEXSeq with multiple conditions
updated 9.2 years ago by 42k • written 9.2 years ago by ★ 3.7k
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5.3k
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Answer: A: Error in estimateDispersionsFit [DESeq2]
9.3 years ago Simon Anders ★ 3.7k
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0
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1.5k
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Answer: A: Multi factor analysis in DEXSeq
9.3 years ago Simon Anders ★ 3.7k
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1.4k
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Answer: A: Implementation of SAM statistical technique in R
9.3 years ago Simon Anders ★ 3.7k
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861
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Answer: A: DeSEQ for transcriptomes of pathogens
9.3 years ago Simon Anders ★ 3.7k
7
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4.6k
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Answer: A: DEXSeq Usage and Expression Confusion
9.4 years ago Simon Anders ★ 3.7k
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0
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1.2k
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Answer: A: question about DESeq: estimateDispersions
9.4 years ago Simon Anders ★ 3.7k
1
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1
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5.3k
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Answer: A: Only one replicate: inferring dispersion from other group
9.4 years ago Simon Anders ★ 3.7k
2
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0
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2.9k
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Answer: A: Reference for differential gene expression analysis
9.4 years ago Simon Anders ★ 3.7k
2
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1
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3.1k
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Answer: A: Using Sailfish estimated read-counts for DESeq2 analysis
9.5 years ago Simon Anders ★ 3.7k
200 results • Page 1 of 4
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