User: Dana.Stanley@csiro.au

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Posts by Dana.Stanley@csiro.au

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Answer: A: how to make line graph
... Thanks Alex G! Yes, that works as well. WGCNA package offers a number of good plots but not this one. Thanks to all for help!!! Dana [[alternative HTML version deleted]] ...
written 5.7 years ago by Dana.Stanley@csiro.au110
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Comment: C: how to make line graph
... Thank you both James and Benilton!!! I finally have a graph in front of me... Thanks!!! -----Original Message----- From: James W. MacDonald [mailto:jmacdon@uw.edu] Sent: Tuesday, March 06, 2012 12:40 AM To: Stanley, Dana (LI, Geelong AAHL) Cc: bioconductor at r-project.org Subject: Re: [BioC] h ...
written 5.7 years ago by Dana.Stanley@csiro.au110
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Comment: C: how to make line graph
... Thanks Jim!!! I have a list of genes that follow specific pattern coming from co- expressed network module I did in WGCNA. I subsetted the original eset to contain only genes from my modules of interest and now I want to see the pattern of expression of the genes from each subset across all of my s ...
written 5.7 years ago by Dana.Stanley@csiro.au110
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how to make line graph
... Dear All I am trying to make a nice line chart using subset of my eset. I have been trying all night but I did not get very far, it does not seem to be as popular as other charts in Bioconductor literature. I just could not find any examples. Can anyone help me with this? Which package to use and s ...
written 5.7 years ago by Dana.Stanley@csiro.au110
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Answer: A: how to add a table to AnnotationDbi sqlite database?
... Thanks Marc Sorry for the late reply, I was away for a week. I did use SQLForge to make a (AnnotationDbi) custom package that I called GGal.db. It works for all I need, like oligo, limma etc, but when I tried to run goProfyles package with GGal.db it was asking for the object "GGal.dbENTREZID' not ...
written 5.9 years ago by Dana.Stanley@csiro.au110
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how to add a table to AnnotationDbi sqlite database?
... Hi all I am trying to use goProfyles with my custom chicken database GGal.db. The package is looking for the file in my database that does not exist : Error in eval(expr, envir, enclos) : object 'GGal.dbENTREZID' not found I can make a simple table linking my ID and entrez id that the package is ...
written 6.0 years ago by Dana.Stanley@csiro.au110
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2 way anova in Bioconductor
... Thank you all for your help, especially Jenny for such a detailed explanation!!! I followed your email and got it to work!!! Thanks again Dana -----Original Message----- From: Natasha Sahgal [mailto:nsahgal@well.ox.ac.uk] Sent: Thursday, 30 June 2011 7:27 PM To: Jenny Drnevich Cc: Stanley, Dana ...
microarray go genefilter limma genespring abarray preprocesscore arrayqualitymetrics brain written 6.4 years ago by Dana.Stanley@csiro.au110 • updated 6.4 years ago by Guillaume Meurice210
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2 way anova in Bioconductor
... Hi Everyone I use custom designed chicken high-density multiplex one channel microarray (NimbleGen 12x135K). My usual pipeline includes mostly oligo, arrayQualityMetrics, preprocessCore, genefilter, GeneSelector and limma. So far I only worked with simple design, 2 conditions; control/treatment sty ...
go genefilter limma genespring abarray preprocesscore arrayqualitymetrics written 6.4 years ago by Dana.Stanley@csiro.au110 • updated 6.4 years ago by Jenny Drnevich1.9k
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Answer: A: importing ID table in AnnotationDbi
... THANKS MARK!!!! I have my package up and running! xoxoxo [[alternative HTML version deleted]] ...
written 6.7 years ago by Dana.Stanley@csiro.au110
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importing ID table in AnnotationDbi
... I am trying to make annotation package for my array platform using AnnotationDbi package. I prepared txt file that links customID and unigene. The table I am trying to import here has only 2 columns; one is gene id (CLIGG_00001) and the other is unigene id (Gga.1). I tried all I could google out and ...
annotation affy written 6.7 years ago by Dana.Stanley@csiro.au110

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Popular Question 5.7 years ago, created a question with more than 1,000 views. For 2 way anova in Bioconductor

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