User: David Lyon

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David Lyon320
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Posts by David Lyon

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Answer: A: error in function reduce from girafe
... Hello can someone show me how to add metadata to a FC file eg: If I wanted to add $patient_id = 100 to an existing FC file whats the exact code to do this? also if I wanted to modify an existing value whats the exact code ? Thanks alot ...
written 7.4 years ago by David Lyon320
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Comment: C: biomaRt
... Thanks Steffen and James for your help....have a good weekend. Cheers ________________________________ From: Steffen Durinck Cc: James W. MacDonald ; Bioconductor@stat.math.ethz.ch Sent: Fri, June 11, 2010 6:10:43 PM Subject: Re: [BioC] biomaRt Hi David, Querying them all at once would inde ...
written 7.5 years ago by David Lyon320
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Comment: C: biomaRt
... HI James That works, Thank you very much. On last question, if I wanted to map the entire human chip onto the mouse ship not just a few probe ids but all probes what would be the most efficient way of doing this? Thanks again ----- Original Message ---- From: James W. MacDonald To: David Lyon ...
written 7.5 years ago by David Lyon320
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biomaRt
... Does anyone know how to map the affy probe set chips Human Gene 1.0 ST Array to the Mouse Gene 1.0 ST Array using biomaRt ? Thanks ...
probe affy biomart written 7.5 years ago by David Lyon320 • updated 7.5 years ago by James W. MacDonald45k
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Answer: A: annotationTools
... ignore this question I got it working the affy annot format has the dreaded #comments which needs to be taken care of before it would work Thanks ----- Original Message ---- From: David Lyon To: bioconductor at stat.math.ethz.ch Sent: Thu, June 10, 2010 8:41:48 PM Subject: [BioC] annotationToo ...
written 7.5 years ago by David Lyon320
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annotationTools
... Does anyone know what this error means and exactly how to fix it? Thanks a million.... > annotHuman <- read.csv("HG-U133A_2.na30.annot.csv", colClasses = "character") > annotMouse <- read.csv("HT_MG-430A.na30.annot.csv", colClasses = "character") > homologene<-read.delim('homol ...
probe written 7.5 years ago by David Lyon320
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Cross Platform Array Mapping
... Hi if I had some human chip array results eg: http://bioconductor.org/packages/2.6/data/annotation/html/hu6800.db.ht ml How does one map the probes to other human chip platforms like: http://bioconductor.org/packages/2.6/data/annotation/html/hu35ksubc.db .html or http://bioconductor.org/packages/2 ...
written 7.5 years ago by David Lyon320 • updated 7.5 years ago by Benjamin Otto830
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Comment: C: GEOquery Meta
... HI Sean That works, Thank You very much. ________________________________ From: Sean Davis Cc: bioconductor@stat.math.ethz.ch Sent: Wed, June 9, 2010 2:36:18 PM Subject: Re: [BioC] GEOquery Meta >Hi > >>How do I get all the meta data from a gds GEO file? > >>For e ...
written 7.5 years ago by David Lyon320
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GEOquery Meta
... Hi How do I get all the meta data from a gds GEO file? For example Meta(gds535) gives all the metadata from DATASET as below but it doesnt return the metadata associated with the SUBSET eg for GDS535.soft the Meta function "Meta(gds535)" doesnt return the following, is there a way to retrieve thi ...
cancer prostate written 7.5 years ago by David Lyon320 • updated 7.5 years ago by Sean Davis21k
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Comment: C: Publication Quality Table in R
... OK I got it to output latex using the package xtable but how do we print out to jpeg or png? Thanks again "my_frame <- read.table(file="table", header=TRUE, sep="\t"); print(design.table, type="latex")" '% latex table generated in R 2.11.0 by xtable 1.5-6 package % Mon Jun 7 16:03:59 2010 \ ...
written 7.5 years ago by David Lyon320

Latest awards to David Lyon

Great Question 7.4 years ago, created a question with more than 5,000 views. For 1000 R tutorials/Links
Popular Question 7.4 years ago, created a question with more than 1,000 views. For 1000 R tutorials/Links

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