User: avinash gupta

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avinash gupta130
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Posts by avinash gupta

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Comment: C: GO categories in R for A. Thaliana
...  Hi Everyone, How to pathway analysis of Arabidopsis thaliana organism using  pathview. Data  preparation for input and analysis. thank you ...
written 18 months ago by avinash gupta130
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How to pathway analysis of Arabidopsis thaliana organism
...  How to pathway analysis of Arabidopsis thaliana organism using  pathview. Data  preparation for input and analysis. ...
microarray pathview written 18 months ago by avinash gupta130
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Pathway analysis for diffrential express gene
... i have done DE analysis using geo2R of data set which have 24 cel file annotate with ath1121501.db. In ath1121501.db there is no any ath1121501ENTREZID object so wher to i get entrezid for  DE gene.   when i take top 20 DE gene for analysis. i have problem in gene set and data preparation.  so how c ...
annotation pathways gostats gage written 19 months ago by avinash gupta130
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image matching
... hello group, i have two image A and B. I want to match match these image one to another.if image is match result is give in percentage like 85% match, 100% match or any other value .if any package support for it.please mail me. thank you. Regards Avinash Gupta BCS-In Silico Biology Lucknow 860440 ...
written 7.3 years ago by avinash gupta130 • updated 7.3 years ago by Moshe Olshansky250
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how to import xls file R
... hello group, i have problem to understand that how to import any exel file in R.please any help me with any example. thank you Regards Avinash Gupta BCS-In Silico Biology Lucknow 8604401063 9654213253 [[alternative HTML version deleted]] ...
written 7.4 years ago by avinash gupta130 • updated 7.4 years ago by Steve Lianoglou12k
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... sir , i have completed k-means clustering and identify 19 cluster and plot it . how can i extract the gene ids or probe ids from separate cluster.please mail me as soon as possible thank you Regards avinash gupta [[alternative HTML version deleted]] ...
written 8.3 years ago by avinash gupta130
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... sir , i have completed k-means clustering and identify 19 cluster and plot it . how can i extract the gene ids or probe ids from separate cluster.please mail me as soon as possible thank you Regards avinash gupta [[alternative HTML version deleted]] ...
written 8.3 years ago by avinash gupta130
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Bioconductor Digest, Vol 87, Issue 25
... to list , i have completed the k-means clustering .and i have 19 plot of cluster . i want find out that which gene are common gene in those cluster. my hclust plot are very dense so ,i want to split it in to 2 -3 pages ,is it possible in R if yes then,please mail me. regards avinash gu ...
clustering written 8.3 years ago by avinash gupta130
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... sir, puma clustering method . i make the object of (sample6, Celfile) by this command dat<-ReadAffy() library(pumadata) >eset_mmgmos<-mmgmos(dat) >eset_rma<-rma(dat) after that i do "dentifying differentially expressed genes" method in this method i use this command >eset ...
written 8.4 years ago by avinash gupta130
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... List, sir , i have create the object by downloading CEL file through Array Express,now I want to do puma clustering method, for this i use "*puma: a Bioconductor package for propagating uncertainty in * *microarray analysis*" for guideline, in this method i done pumaPCA method,but in the sec ...
written 8.4 years ago by avinash gupta130

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