User: avinash gupta

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avinash gupta130
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Posts by avinash gupta

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Comment: C: GO categories in R for A. Thaliana
...  Hi Everyone, How to pathway analysis of Arabidopsis thaliana organism using  pathview. Data  preparation for input and analysis. thank you ...
written 8 months ago by avinash gupta130
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How to pathway analysis of Arabidopsis thaliana organism
...  How to pathway analysis of Arabidopsis thaliana organism using  pathview. Data  preparation for input and analysis. ...
microarray pathview written 8 months ago by avinash gupta130
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Pathway analysis for diffrential express gene
... i have done DE analysis using geo2R of data set which have 24 cel file annotate with ath1121501.db. In ath1121501.db there is no any ath1121501ENTREZID object so wher to i get entrezid for  DE gene.   when i take top 20 DE gene for analysis. i have problem in gene set and data preparation.  so how c ...
annotation pathways gostats gage written 9 months ago by avinash gupta130
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image matching
... hello group, i have two image A and B. I want to match match these image one to another.if image is match result is give in percentage like 85% match, 100% match or any other value .if any package support for it.please mail me. thank you. Regards Avinash Gupta BCS-In Silico Biology Lucknow 860440 ...
written 6.5 years ago by avinash gupta130 • updated 6.5 years ago by Moshe Olshansky250
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how to import xls file R
... hello group, i have problem to understand that how to import any exel file in R.please any help me with any example. thank you Regards Avinash Gupta BCS-In Silico Biology Lucknow 8604401063 9654213253 [[alternative HTML version deleted]] ...
written 6.5 years ago by avinash gupta130 • updated 6.5 years ago by Steve Lianoglou12k
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... sir , i have completed k-means clustering and identify 19 cluster and plot it . how can i extract the gene ids or probe ids from separate cluster.please mail me as soon as possible thank you Regards avinash gupta [[alternative HTML version deleted]] ...
written 7.5 years ago by avinash gupta130
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... sir , i have completed k-means clustering and identify 19 cluster and plot it . how can i extract the gene ids or probe ids from separate cluster.please mail me as soon as possible thank you Regards avinash gupta [[alternative HTML version deleted]] ...
written 7.5 years ago by avinash gupta130
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Bioconductor Digest, Vol 87, Issue 25
... to list , i have completed the k-means clustering .and i have 19 plot of cluster . i want find out that which gene are common gene in those cluster. my hclust plot are very dense so ,i want to split it in to 2 -3 pages ,is it possible in R if yes then,please mail me. regards avinash gu ...
clustering written 7.5 years ago by avinash gupta130
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... sir, puma clustering method . i make the object of (sample6, Celfile) by this command dat<-ReadAffy() library(pumadata) >eset_mmgmos<-mmgmos(dat) >eset_rma<-rma(dat) after that i do "dentifying differentially expressed genes" method in this method i use this command >eset ...
written 7.5 years ago by avinash gupta130
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Comment: C: Bioconductor Digest, Vol 87, Issue 10
... List, sir , i have create the object by downloading CEL file through Array Express,now I want to do puma clustering method, for this i use "*puma: a Bioconductor package for propagating uncertainty in * *microarray analysis*" for guideline, in this method i done pumaPCA method,but in the sec ...
written 7.5 years ago by avinash gupta130

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