User: Ernest Turro

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Ernest Turro30
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9 years, 1 month ago
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9 years, 6 months ago
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e***********@imperial.ac.uk

Posts by Ernest Turro

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Human Affymetrix Exon microarrays
... Hi, You might want to try my R package mmbgx. The package includes pre- defined probe-probeset mappings obtained from X:Map, which makes it too big for Bioconductor (135MB). I will adapt it to work with xmapcore, though, and then submit it to Bioconductor. I thought it might be useful to some of yo ...
exonmap written 9.1 years ago by Ernest Turro30
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Comment: C: gc-rma and vsn normalization for rat microarray data
... Hi Rainer, FYI there's a new version of bgx called mmbgx, available from http://bgx.org.uk (though not in bioconductor yet), which works with Gene ST arrays. Regards, Ernest On 15 Jun 2010, at 12:35, "Groot, Philip de" wrote: > Hello Rainer, > > Why don't you simply use vsnrma? This ...
written 9.5 years ago by Ernest Turro30
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bgx on data without replication
... On 10 Jun 2010, at 17:54, Ina Hoeschele wrote: > Hi, I have been analyzing an affy microarray dataset with 2 treatments and 1 control, which do not have replication (so total of 3 chips), with several methods that do not require replication, including bgx. BGX seems to give the poorest results w ...
microarray affy bgx written 9.5 years ago by Ernest Turro30

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