User: Ning

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Ning80
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8 years, 4 months ago
Joined:
9 years, 4 months ago
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l***@niaid.nih.gov

Posts by Ning

<prev • 8 results • page 1 of 1 • next >
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Answer: A: error LiWongRank in RNAither
... Hi everyone, I'm using the LiWongRank function in RNAither to do with my data. Here's the code of the example that is failing: > data(exampleHeader, package="RNAither") data(exampleDataset, > package="RNAither") > normres <- LiWongRank(header, dataset, list("SigIntensity", "GeneName")) ...
written 8.4 years ago by Ning80
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error LiWongRank in RNAither
... Hi everyone, I'm using the LiWongRank function in RNAither to do with my data. Here's the code of the example that is failing: > data(exampleHeader, package="RNAither") > data(exampleDataset, package="RNAither") > normres <- LiWongRank(header, dataset, list("SigIntensity", "GeneName")) T ...
rnaither written 8.4 years ago by Ning80 • updated 8.4 years ago by Nora20
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The question about “NPI” normalization method
... Hi Wolfgang, I have 4 different positive controls in my screen and I want to use ?NPI? method to normalize the plates. Whether can I define the specific one as the positive control to be applied to this method? The following is the partial scripts about positive controls posControls <- vector( ...
written 9.0 years ago by Ning80 • updated 9.0 years ago by Wolfgang Huber13k
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the issue with analysis of multi-channel screen
... Hi Wolfgang, I have 3 channels applied in screen. Two of them are used as the reporter to monitor the early stage of signaling pathway, the other one is for the late stage. The following is the script library("cellHTS2") experimentName <- "DataIntegration" dataPath <- system.file(experimentN ...
written 9.1 years ago by Ning80 • updated 9.1 years ago by Wolfgang Huber13k
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The issue with Report Pearson instead of Spearman
... Hi Wolfgang, Thank you for your reply. Actually my question is how I can let the results of Pearson correlation showed in the report when I use the function of writeReport. As every time I use this function, only the results of Spearman rank correlation were showed in the report, even I have called ...
written 9.3 years ago by Ning80 • updated 9.3 years ago by Wolfgang Huber13k
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The issue with Report Pearson instead of Spearman
... Hi Wolfgang, Thank you for your help. Please forgive me always asking some naive questions as I have never used the R language before and I have to learn everything from zero. My question is how I can show the correlation with ?pearson? instead of "spearman" in the HTML reports. My understanding ...
cellhts2 written 9.3 years ago by Ning80 • updated 9.3 years ago by Wolfgang Huber13k
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error with getMeasureRepAgreement()
... error with getMeasureRepAgreement() Hi, I want to use "pearson" rather than "spearman". So I made such a change: xsc <- getMeasureRepAgreement(xn, corr.method = "pearson") However an error happened: Error in cellHTSlistVerification (xr = raw, xn = normalized, xsc = scored, : The component 'sc ...
preprocessing written 9.3 years ago by Ning80 • updated 9.3 years ago by Wolfgang Huber13k
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Normalization
... Hi everyone, The cellHTS2 method normalizePlates has not the proper way for me to normalize my raw data, because I set up two criteria: one is used for measuring high signaling activity; the other is used for no activity measurement. Then I calculated the percentage of cells belonging to the part o ...
normalization cellhts2 written 9.4 years ago by Ning80 • updated 9.3 years ago by Wolfgang Huber13k

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