The support.bioconductor.org editor has been updated to markdown! Please see more info at: Tutorial: Updated Support Site Editor
User: Alex Levitchi
Alex Levitchi • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- Last seen:
- 8 years, 5 months ago
- Joined:
- 8 years, 6 months ago
- Email:
- a************@cbm.fvg.it
Posts by Alex Levitchi
<prev
• 3 results •
page 1 of 1 •
next >
0
votes
4
answers
818
views
4
answers
... Dear Sean,
Thanks a lot.
I did it in the following way (the idea I took from 'getGEOfile'):
columns=c('title','type','source_name_ch1','platform_id')
geo=getGEO(idata,GSEMatrix=TRUE)
if (idata_name=="GSM") {
expression=matrix(Table(geo)$VALUE)
pdata=Meta(geo)[columns]
colnames(expression)=pdata[3 ...
written 8.5 years ago by
Alex Levitchi • 30
0
votes
4
answers
818
views
4
answers
... Dear Sean Davis,
Since my last letter, I managed to do almost everything.
Unfortunately, I am not definitely understanding the aim of organizing
microarray data in GSEs and GDSs, in sense that GEOquery uses
different tactics to load data and convert them. So, probably,
creating a tool I also must ta ...
written 8.5 years ago by
Alex Levitchi • 30
0
votes
1
answer
654
views
1
answer
... Dear Bioconductors,
I am working on the development of a tool which use to download
microarray data and then make the connection to Bioconductor
annotation packages.
My specific answer is about the way to manage downloading different
kinds of microarrays, which can be:
- GSE
- several GSMs
- users d ...
written 8.6 years ago by
Alex Levitchi • 30
• updated
8.6 years ago by
Sean Davis ♦ 21k
Latest awards to Alex Levitchi
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 226 users visited in the last hour