User: noxyport@gmail.com

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Posts by noxyport@gmail.com

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Comment: C: HapMap gene list
... You are right! Sorry to bother you with this. However, there is still something wrong. When I export the file again (write.table) there are CDS and UTR included and when you run: > hapmap=read.table("refGene_hg18_tests_11Apr07.gff", header=F, sep=" ") > nrow(hapmap) [1] 171701 > hapmap2=ha ...
written 9.4 years ago by noxyport@gmail.com20
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HapMap gene list
... Hi, I have a problem with the gene list (gff version3 file) HapMap is using (ftp://ftp.ncbi.nlm.nih.gov/hapmap/gbrowse/2009-02_phaseII+III/g ff/refGene_hg18_tests_11Apr07.gff.gz). I tried loading the file into R and selecting all "mRNA" entries but something seems to go wrong with it: > hapmap= ...
go hapmap written 9.4 years ago by noxyport@gmail.com20 • updated 9.4 years ago by Kasper Daniel Hansen6.4k

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