User: branislav misovic

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Netherlands, Leiden
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Joined:
6 years, 11 months ago
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Posts by branislav misovic

<prev • 24 results • page 1 of 3 • next >
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Answer: A: msa package installation problem
...     I  found an issue  ...   Year ago i added 2lines into  my Rprofile.site   : the    source("http://bioconductor.org/biocLite.R")   and  a line with   cat("some message") ,for some reminder  .  This cat was the hidden trouble maker ,  never had issue with it till now ...   I discovered by accident ...
written 6 months ago by branislav misovic120
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Comment: C: msa package installation problem
... ok thanx, i checked ,  it is created , i deleted the  ClustalOmega/src/config.h  file before runing the  ./configure ... still if i run the install.packages  ("msa_1.6.0.tar.gz" ,  repos = NULL) i get the same error : checking build system type... Invalid configuration `...': machine `...' not re ...
written 7 months ago by branislav misovic120
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Comment: C: msa package installation problem
... thanx for the feedback gents , and sorry for the slow reply ... today i checked it and if i run : > ./config.guess x86_64-unknown-linux-gnu # If i check the config.guess shell script my box is UNAME_MACHINE=`(uname -m) 2>/dev/null` || UNAME_MACHINE=unknown UNAME_RELEASE=`(uname -r) ...
written 7 months ago by branislav misovic120
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Comment: C: msa package installation problem
... Thank you  for quick response, no rush here ....   I just found your package and wanted to test it,  you made fantastic easy  MSA access! Btw.  how can  i skip installation of  Clustal omega ?  I guess  other aligners  are  probably working  (i just noticed the  info in your  PDF demo about commenti ...
written 7 months ago by branislav misovic120
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Comment: C: msa package installation problem
... Ok Martin just did what you asked. ...
written 7 months ago by branislav misovic120
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msa package installation problem
... hi MSA  devs ,all    I have  msa installation problem  (all dependent packages went fine  ). biocLite ("msa") ... Welcome to Clustal Omega - version 1.2.0 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 IMMMMS MMMMM, ...
msa written 7 months ago by branislav misovic120 • updated 6 months ago by Nam0
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Comment: C: interactive networks from WGCNA clusters
... you mean these tutorials ? https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/index.html ...
written 13 months ago by branislav misovic120
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Answer: A: interactive networks from WGCNA clusters
... hi I would propose you   to also try   BioC package  RedeR: https://www.bioconductor.org/packages/release/bioc/vignettes/RedeR/inst/doc/RedeR.pdf I used it for nesting and clustering . not to forget ,   big  Thank you to   Paul for great work   on   many   packages Best, Branko p.s. our security ...
written 13 months ago by branislav misovic120
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Answer: A: Custom scoring for subnetworks in BioNet
... hi again ,     so in your other post i mentioned the  course i attended last year  , check  link there you can open this  exercise:  and  in pdf they say "  In input/Heinz Nodes FDR 7e-04.txt the nodes score that were used to generate the module referred to in the presentation are given. Observe th ...
written 14 months ago by branislav misovic120
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Answer: A: Additional high-scoring subnetworks in BioNet
... hi  Enrico   Last year ,during the Networks course,  I  asked same question Gunnar W. Klau  (one of  the authors who worked with Heinz &  link to Cytoscape Examine plugin )   ,   he said :  "you can remove your 1st Module nodes from you PPI DB  and rerun the Heinz to get 2nd Module ... in the pa ...
written 14 months ago by branislav misovic120

Latest awards to branislav misovic

Scholar 23 months ago, created an answer that has been accepted. For A: Analyzing Open source PPI databases

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