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Answer: A: ensemblVEP, variant_effect_predictor versions and release schedule
12.2 years ago Valerie Obenchain ★ 6.8k
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2.2k
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Comment: C: Fwd: summarizeOverlaps behavior on RNA-Seq paired end stranded data
12.2 years ago Valerie Obenchain ★ 6.8k
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3.3k
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Comment: C: need additional sanity checks in TabixFile or readVcf
12.2 years ago Valerie Obenchain ★ 6.8k
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1
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2.2k
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Answer: A: Fwd: summarizeOverlaps behavior on RNA-Seq paired end stranded data
12.2 years ago Valerie Obenchain ★ 6.8k
0
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1
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3.3k
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Comment: C: need additional sanity checks in TabixFile or readVcf
12.2 years ago Valerie Obenchain ★ 6.8k
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838
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VariantAnnotation: Specifying 'seqinfo' at import with 'readVcf'
GenomicRanges GenomicRanges
12.2 years ago Valerie Obenchain ★ 6.8k
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Comment: C: zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
12.3 years ago Valerie Obenchain ★ 6.8k
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Comment: C: VariantAnnotation: Specifying 'seqinfo' at import with 'readVcf'
12.3 years ago Valerie Obenchain ★ 6.8k
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1.6k
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Answer: A: VariantAnnotation: Specifying 'seqinfo' at import with 'readVcf'
12.3 years ago Valerie Obenchain ★ 6.8k
0
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1
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1.9k
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Answer: A: zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
12.3 years ago Valerie Obenchain ★ 6.8k
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1.0k
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Answer: A: GenomicRanges::findOverlap unexpected behaviour with 0 width ranges
12.3 years ago Valerie Obenchain ★ 6.8k
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0
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2.7k
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Comment: C: readGAlignmentPairs error
12.3 years ago Valerie Obenchain ★ 6.8k
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1
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2.7k
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Comment: C: readGAlignmentPairs error
12.3 years ago Valerie Obenchain ★ 6.8k
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1
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2.1k
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Answer: A: replace nucleotide at fixed position in a DNAStringSet object
12.3 years ago Valerie Obenchain ★ 6.8k
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931
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Comment: C: Getting Introns Expression at a Per Gene Level
12.3 years ago Valerie Obenchain ★ 6.8k
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1
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931
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Answer: A: Getting Introns Expression at a Per Gene Level
12.3 years ago Valerie Obenchain ★ 6.8k
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1.8k
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Answer: A: topGO analysis returns different gene counts for category than given for non-mod
12.3 years ago Valerie Obenchain ★ 6.8k
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0
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1.3k
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Comment: C: matchTable for pairwiseAlignment in Biostrings?
12.3 years ago Valerie Obenchain ★ 6.8k
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1
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2.1k
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Comment: C: Finding my un-counted reads
12.3 years ago Valerie Obenchain ★ 6.8k
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2
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2.1k
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Answer: A: Finding my un-counted reads
12.3 years ago Valerie Obenchain ★ 6.8k
0
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0
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1.9k
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Answer: A: findOverlaps() fails with type = 'equal' fails when query is a CollapsedVCF obje
12.4 years ago Valerie Obenchain ★ 6.8k
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2.6k
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Answer: A: Semantics of GenomicRanges gaps()
12.4 years ago Valerie Obenchain ★ 6.8k
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1
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1.3k
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Answer: A: matchTable for pairwiseAlignment in Biostrings?
12.4 years ago Valerie Obenchain ★ 6.8k
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1
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14k
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Comment: C: [GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
12.4 years ago Valerie Obenchain ★ 6.8k
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1
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14k
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Answer: A: [GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
12.4 years ago Valerie Obenchain ★ 6.8k
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4.2k
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Answer: A: saving GRanges objects - resulting file size issue
12.4 years ago Valerie Obenchain ★ 6.8k
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4.2k
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Answer: A: saving GRanges objects - resulting file size issue
12.4 years ago Valerie Obenchain ★ 6.8k
0
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1
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3.9k
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Comment: C: RNASeq:- getting Zero Count
12.4 years ago Valerie Obenchain ★ 6.8k
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1
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3.9k
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Comment: C: RNASeq:- getting Zero Count
12.4 years ago Valerie Obenchain ★ 6.8k
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1
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3.9k
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Answer: A: RNASeq:- getting Zero Count
12.4 years ago Valerie Obenchain ★ 6.8k
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2.0k
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Comment: C: Error in locateVariants
12.4 years ago Valerie Obenchain ★ 6.8k
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2.0k
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Answer: A: Error in locateVariants
12.4 years ago Valerie Obenchain ★ 6.8k
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1.1k
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Answer: A: How to transform a fastq object in granges?
12.4 years ago Valerie Obenchain ★ 6.8k
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1
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3.1k
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Comment: C: Filtering BAM files by start position for VariantTools
12.5 years ago Valerie Obenchain ★ 6.8k
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1
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3.1k
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Comment: C: Filtering BAM files by start position for VariantTools
12.5 years ago Valerie Obenchain ★ 6.8k
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0
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3.1k
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Comment: C: Filtering BAM files by start position for VariantTools
12.5 years ago Valerie Obenchain ★ 6.8k
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2
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3.1k
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Answer: A: Filtering BAM files by start position for VariantTools
12.5 years ago Valerie Obenchain ★ 6.8k
0
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1
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2.1k
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Answer: A: summarizeOverlaps with mapq filter?
12.5 years ago Valerie Obenchain ★ 6.8k
0
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2
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1.1k
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using a gtf file to map reads
GO GenomicFeatures DEXSeq GO GenomicFeatures DEXSeq
updated 12.5 years ago by ★ 1.9k • written 12.5 years ago by ★ 6.8k
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1.1k
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Answer: A: PREDA command does not work
12.5 years ago Valerie Obenchain ★ 6.8k
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632
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summarizeOverlaps: ambiguous method dispatch
GO GO
12.5 years ago Valerie Obenchain ★ 6.8k
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4.0k
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Comment: C: SNP annotation in R
12.5 years ago Valerie Obenchain ★ 6.8k
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4.0k
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Comment: C: SNP annotation in R
12.5 years ago Valerie Obenchain ★ 6.8k
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2.9k
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Comment: C: using a gtf file to map reads
12.6 years ago Valerie Obenchain ★ 6.8k
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2.9k
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Comment: C: using a gtf file to map reads
12.6 years ago Valerie Obenchain ★ 6.8k
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421
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Answer: A: Plugins in ensemblVEP
12.6 years ago Valerie Obenchain ★ 6.8k
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2.3k
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Comment: C: multiple feature/mode counting with summarizeOverlaps
12.6 years ago Valerie Obenchain ★ 6.8k
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2.3k
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Answer: A: multiple feature/mode counting with summarizeOverlaps
12.6 years ago Valerie Obenchain ★ 6.8k
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0
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1.2k
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[devteam-bioc] sort error in GRange
rtracklayer GenomicRanges rtracklayer GenomicRanges
12.6 years ago Valerie Obenchain ★ 6.8k
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966
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Answer: A: summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"
12.6 years ago Valerie Obenchain ★ 6.8k
830 results • Page 11 of 17
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