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Comment: C: VariantAnnotation: Performance and memory issues in readVcf
12.6 years ago Valerie Obenchain ★ 6.8k
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Comment: C: VariantAnnotation: Performance and memory issues in readVcf
12.6 years ago Valerie Obenchain ★ 6.8k
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Answer: A: summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"
12.6 years ago Valerie Obenchain ★ 6.8k
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summarizeOverlaps mode ignoring inter feature overlaps
GenomicRanges Rsamtools GenomicRanges Rsamtools
updated 12.6 years ago by ★ 1.7k • written 12.6 years ago by ★ 6.8k
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Answer: A: VCF class: different length when unlisting INFO CompressedCharacterList
12.6 years ago Valerie Obenchain ★ 6.8k
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Comment: C: VariantAnnotation and distance to genes
12.6 years ago Valerie Obenchain ★ 6.8k
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Answer: A: GenomicRanges flank function with ignore.strand=TRUE
12.6 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Plugins in ensemblVEP
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: XML package - 500 internal server error
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Problem reading VCF file using readVcf from package VariantAnnotation
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Using Precede in GenomicRanges
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: writeVcf bug
12.7 years ago Valerie Obenchain ★ 6.8k
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Subsetting vcf file by subject
VariantAnnotation Annotation cycle VariantAnnotation VariantAnnotation Annotation cycle
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: ensemblVEP: passing on coverage / frequency information
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: ensemblVEP: passing on coverage / frequency information
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Annotated a snp list to find where these snp are located.
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: ensemblVEP: passing on coverage / frequency information
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
12.7 years ago Valerie Obenchain ★ 6.8k
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4.2k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: summarizeOverlaps mode ignoring inter feature overlaps
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Granges: range (gr) does not function
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: summarizeOverlaps mode ignoring inter feature overlaps
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: expand() vcf with no info columns
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: definition for intergenic SNPs in locateVariants function
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: definition for intergenic SNPs in locateVariants function
12.7 years ago Valerie Obenchain ★ 6.8k
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Answer: A: definition for intergenic SNPs in locateVariants function
12.7 years ago Valerie Obenchain ★ 6.8k
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862
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Answer: A: exonsBy order
12.7 years ago Valerie Obenchain ★ 6.8k
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Comment: C: duplicate 'row.names' are not allowed from biocLite.R
12.8 years ago Valerie Obenchain ★ 6.8k
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Answer: A: cummerBund - how to get splicing events
12.8 years ago Valerie Obenchain ★ 6.8k
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Comment: C: (no subject)
12.8 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Subsetting vcf file by subject
12.8 years ago Valerie Obenchain ★ 6.8k
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Comment: C: Calculate Outer Positions of GappedAlignmentPairs
12.8 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Error in .testGOFrame(x, organism)
12.8 years ago Valerie Obenchain ★ 6.8k
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Comment: C: yieldSize and paired end data in SummarizeOverlaps error?
12.8 years ago Valerie Obenchain ★ 6.8k
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Answer: A: yieldSize and paired end data in SummarizeOverlaps error?
12.8 years ago Valerie Obenchain ★ 6.8k
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2.6k
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Answer: A: cummerbund how to get matrix for csheatmap
12.8 years ago Valerie Obenchain ★ 6.8k
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Comment: C: finding neigbouring intervals for 2 GRange objects
12.8 years ago Valerie Obenchain ★ 6.8k
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Answer: A: VariantAnnotation::readVcf is reordering the FORMAT field of my VCF file
12.8 years ago Valerie Obenchain ★ 6.8k
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Comment: C: finding neigbouring intervals for 2 GRange objects
12.8 years ago Valerie Obenchain ★ 6.8k
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1.5k
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Comment: C: flip strand of GappedAlignmentPairs Object
12.8 years ago Valerie Obenchain ★ 6.8k
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Answer: A: ties & strandedness in distanceToNearest GRanges
12.8 years ago Valerie Obenchain ★ 6.8k
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1.5k
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Comment: C: flip strand of GappedAlignmentPairs Object
12.8 years ago Valerie Obenchain ★ 6.8k
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1.5k
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Answer: A: flip strand of GappedAlignmentPairs Object
12.8 years ago Valerie Obenchain ★ 6.8k
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4
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6.5k
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merging VCF files
VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation
written 12.9 years ago by ★ 6.8k
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Comment: C: merging VCF files
12.8 years ago Valerie Obenchain ★ 6.8k
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Answer: A: SNPassoc package data upload
12.8 years ago Valerie Obenchain ★ 6.8k
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611
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ExpressionSet Object
12.9 years ago Valerie Obenchain ★ 6.8k
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Comment: C: GENEID is missing when LOCATION is non-intergenic in VariantAnnotation package
12.9 years ago Valerie Obenchain ★ 6.8k
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1.9k
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Answer: A: GENEID is missing when LOCATION is non-intergenic in VariantAnnotation package
12.9 years ago Valerie Obenchain ★ 6.8k
830 results • Page 12 of 17
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