User: David Ruau

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David Ruau60
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7 years, 8 months ago
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9 years, 2 months ago
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d****@stanford.edu

Posts by David Ruau

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Comment: C: Install error affxparser for R 2.15
... Yes, I do build R from source. I use the macport package manager. It's strange I always had a problems with affxparser and rgl. For rgl I could download the binary version and install it with R CMD INSTALL but today I could not download the binary version of affxparser from bioconductor.org. Thanks ...
written 7.7 years ago by David Ruau60
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Comment: C: Install error affxparser for R 2.15
... Thanks, it worked. David On Apr 9, 2012, at 12:25 PM, Dan Tenenbaum wrote: > On Mon, Apr 9, 2012 at 12:23 PM, David Ruau wrote: >> Hi Dan, >> >> I pasted the output here http://pastebin.com/Lnt79kC5 >> biocLite() tries to install affxparser, fails and ask you if you wa ...
written 7.7 years ago by David Ruau60
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Comment: C: Install error affxparser for R 2.15
... Hi Dan, I pasted the output here http://pastebin.com/Lnt79kC5 biocLite() tries to install affxparser, fails and ask you if you want to update it (at the same time as other packages). And then fails again. Thanks, David On Apr 9, 2012, at 11:47 AM, Dan Tenenbaum wrote: > Hi David, > > On ...
written 7.7 years ago by David Ruau60
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Install error affxparser for R 2.15
... Hello, I am experiencing an error trying to install affxparser on my mac (Snow Leopard 10.6.8) I cannot install from source and the binary version that is not available from Mac OSX snow leopard. Below are the relevant lines of the install process. --- > biocLite("affxparser", type='source') Bi ...
process affxparser biocinstaller written 7.7 years ago by David Ruau60 • updated 7.7 years ago by Dan Tenenbaum8.2k
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Answer: A: Basic question about GENE 1.0 ST
... Dear Guido, I too recently analyzed my first mouse gene 1.0 ST arrays. I used the oligo package. You have an option to compute directly the "transcript" signal in the oligo::rma function. Vignette 05 provide an example. http://www.bioconductor.org/packages/release/bioc/html/oligo.html David --- Da ...
written 7.9 years ago by David Ruau60
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Comment: C: AgiMicroRna problems
... Hi Mark, I just received a data set of Human miRNA V3 and AgiMicroRna does not work. Basically the column gMeanSignal, gBGUsed, chr_coord are not present. I modified readMicroRnaAFE accordingly to the post of Pedro (see after the text) My question is why those columns are not present in the txt fi ...
written 9.2 years ago by David Ruau60

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